Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65120 160 / 2e-46 unknown protein AT5G10110 142 / 2e-39 unknown protein AT5G05240 42 / 0.0006 Uncharacterised conserved protein (UCP030365) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022498 [exp] 676 / 0 AT5G10110 164 / 7e-48 unknown protein Lus10000581 [exp] 125 / 2e-35 AT5G65120 88 / 3e-22 unknown protein Lus10029030 [exp] 51 / 1e-06 AT5G05240 313 / 4e-100 Uncharacterised conserved protein (UCP030365) (.1) Lus10034236 [exp] 50 / 2e-06 AT5G05240 312 / 9e-100 Uncharacterised conserved protein (UCP030365) (.1) Lus10019664 [exp] 44 / 2e-05 ND 36 / 0.003
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G090500 [exp] 265 / 1e-86 AT5G65120 176 / 2e-52 unknown protein Potri.005G077400 [exp] 239 / 1e-76 AT5G10110 150 / 2e-42 unknown protein Potri.019G058200 [exp] 44 / 0.0002 AT5G05240 301 / 2e-95 Uncharacterised conserved protein (UCP030365) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016802 pacid=23149081 polypeptide=Lus10016802 locus=Lus10016802.g ID=Lus10016802.BGIv1.0 annot-version=v1.0 ATGAGTGGGAATAGTTCCGCGGACGAGGTTGCTAAGACTCGTCCAGCCCTAGGGGATCTGACAAATCAGACGCTTAAGAGAGGGTTTTCCTCAATTTACA GCGATTCAGGGCTGAGATGTGTTGATGGTGCTGAAGATTCAGGTTTTGCGAAGCAGGTGTGTTTAGGAGTGGAGAATTTGGTCAGAGAGAGATGCCAATC TGGGTTTAAGAATAGCAGTGATGGTACTAGGAAAGGTATTCTTGTTAAGAAAGACGGGAAAAATCAGGGTTCAGATCCCGCTGCTTGTCAAATTGATTTG GAAGGAGTTGGAAATGTAGTCTCTTTGCTCTCAGATGGACCCAAAGACGAAACAAAAGTTAAAGAAGCATCTTCTAATCCCTTAGATGGCGGCACTGATG TAATTGACAAAAGTACGGGAGATGCATCGGGAGATAGCTGTGGATCTAGCAGAACTGATAGTGACGATGAAGTAAGAATAACGTACAATGTGTCACTGAG CCAACAATCCATAGGTGAAGTGTTTGGTAGTAGTCAAGGGTTGACTGATGAGAGCAAAGATCCCGGAGTTGATGTGTTTGGTGGTGAAACTACTGGGCTT GCGGAGGGTAGGATGAAATCCTTCCAGTTGGATAGATGCACAAGGCTTGAAGACGGTGATGGTTGTTGTAATAAAGACTTGGGTGCTGACTTCCTCAAAA CATGTTCTTGTCCATTTTGCCTGACGGCTGCTTTTATGTGGTCTGACCTCCACTATCAAGACGTCAAGGGTCGATTATCTTCATTGAAGAAGAGCCAGAA GGAAGCTAGCATATTGGTGAACAAATTTTCCAGGGGAAGGCAGGCTGAAGTTCATGAACAAGCAACTTCCAGCAAACCACTTCAGTTGGAAACTGACTTG ACATGTCAGTGGAGATCTCTCTTTCAGCACATGGAAGATATATTTGCTCAGGAAAGCAACCAGATTGAAAAGAACTTCTTTGCCCTGAAAGATTTGAGAG AGAGTTGCAAGACAGATCTAGTAAAGACCACCAGGGTGCCTCCGGAAAACTGA
AA sequence Show only first row Show all	>Lus10016802 pacid=23149081 polypeptide=Lus10016802 locus=Lus10016802.g ID=Lus10016802.BGIv1.0 annot-version=v1.0 MSGNSSADEVAKTRPALGDLTNQTLKRGFSSIYSDSGLRCVDGAEDSGFAKQVCLGVENLVRERCQSGFKNSSDGTRKGILVKKDGKNQGSDPAACQIDL EGVGNVVSLLSDGPKDETKVKEASSNPLDGGTDVIDKSTGDASGDSCGSSRTDSDDEVRITYNVSLSQQSIGEVFGSSQGLTDESKDPGVDVFGGETTGL AEGRMKSFQLDRCTRLEDGDGCCNKDLGADFLKTCSCPFCLTAAFMWSDLHYQDVKGRLSSLKKSQKEASILVNKFSRGRQAEVHEQATSSKPLQLETDL TCQWRSLFQHMEDIFAQESNQIEKNFFALKDLRESCKTDLVKTTRVPPEN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65120			unknown protein		Lus10016802 [exp]	0	1
AT1G61000			unknown protein		Lus10020820 [exp]	1.4	0.9429
AT5G52800			DNA primases (.1.2.3)		Lus10014953 [exp]	1.7	0.9297
AT1G04030			unknown protein		Lus10029611 [exp]	3.5	0.9259
AT4G01270			RING/U-box superfamily protein...		Lus10018817 [exp]	4.5	0.9309
AT1G19080		PSF3, TTN10	TITAN 10, Partner of SLD5 3, G...		Lus10014848 [exp]	4.9	0.9050
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10035991 [exp]	8.4	0.9155
AT1G67320		EMB2813	EMBRYO DEFECTIVE 2813, DNA pri...		Lus10000602 [exp]	11.0	0.9247
AT2G20635			ATP binding;protein kinases;pr...		Lus10033673 [exp]	11.3	0.8998
AT3G27360			Histone superfamily protein (....		Lus10031821 [exp]	12.3	0.9149
AT3G54560		HTA11	histone H2A 11 (.1)		Lus10024838 [exp]	14.5	0.9052

Compare expression of checked genes

Lus10016802 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.