Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36810 486 / 6e-173 GGPS1 geranylgeranyl pyrophosphate synthase 1 (.1) AT2G18620 456 / 2e-161 Terpenoid synthases superfamily protein (.1) AT2G18640 408 / 5e-142 GGPS4 geranylgeranyl pyrophosphate synthase 4 (.1) AT2G23800 400 / 7e-139 GGPS5, GGPS2 GERANYLGERANYL PYROPHOSPHATE SYNTHASE 5, geranylgeranyl pyrophosphate synthase 2 (.1) AT3G20160 393 / 2e-136 Terpenoid synthases superfamily protein (.1) AT3G14550 391 / 2e-135 GGPS3 geranylgeranyl pyrophosphate synthase 3 (.1) AT3G14530 391 / 2e-135 Terpenoid synthases superfamily protein (.1) AT3G29430 382 / 8e-132 Terpenoid synthases superfamily protein (.1) AT3G32040 379 / 1e-130 Terpenoid synthases superfamily protein (.1) AT3G14510 358 / 8e-124 Polyprenyl synthetase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022499 [exp] 712 / 0 AT4G36810 491 / 8e-175 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10028509 [exp] 420 / 1e-146 AT4G36810 437 / 2e-153 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10017624 [exp] 404 / 5e-139 AT4G36810 439 / 5e-153 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10017625 [exp] 399 / 1e-138 AT4G36810 423 / 5e-148 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10028508 [exp] 375 / 5e-129 AT4G36810 380 / 9e-132 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10028507 [exp] 348 / 1e-118 AT4G36810 375 / 2e-129 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10009138 [exp] 340 / 4e-115 AT4G36810 373 / 2e-128 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10033582 [exp] 301 / 2e-102 AT4G36810 305 / 6e-104 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10025096 [exp] 229 / 1e-72 AT4G38460 381 / 5e-133 geranylgeranyl reductase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G127100 [exp] 564 / 0 AT4G36810 444 / 2e-156 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.007G031100 [exp] 545 / 0 AT4G36810 467 / 1e-165 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.004G090600 [exp] 431 / 5e-151 AT4G36810 419 / 1e-146 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.017G124700 [exp] 412 / 8e-144 AT4G36810 413 / 1e-144 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.017G124600 [exp] 402 / 7e-140 AT4G36810 388 / 2e-134 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.004G179628 [exp] 253 / 9e-82 AT4G38460 403 / 3e-141 geranylgeranyl reductase (.1) Potri.009G139600 [exp] 251 / 5e-81 AT4G38460 389 / 7e-136 geranylgeranyl reductase (.1) Potri.001G380500 [exp] 127 / 5e-33 AT1G78510 597 / 0.0 solanesyl diphosphate synthase 1 (.1.2) Potri.015G043400 [exp] 108 / 1e-26 AT4G38460 121 / 4e-32 geranylgeranyl reductase (.1) Potri.011G101301 [exp] 97 / 7e-22 AT1G17050 427 / 2e-148 solanesyl diphosphate synthase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [flax] [poplar] Terp_synthase PF00348 [flax] [poplar] polyprenyl_synt Polyprenyl synthetase
Representative CDS sequence Show only first row Show all	>Lus10016803 pacid=23149160 polypeptide=Lus10016803 locus=Lus10016803.g ID=Lus10016803.BGIv1.0 annot-version=v1.0 ATGAGTTGCTCTTCCTCCTCTGTTCATTTGGGTTGCTGGGTTCATACATCCTCAATCTTCCTCACCAGATCTAGATCCAAATCTCAATCCCTAACTCCTC CTCTCAAAACCCTCTCCATTCCCCTCCGACGCCACCGCCGCATCTCCACCGCATCCGCCGTTCTCACCAGGGAAGACAAGGAGTCATCATCATCCCTCCA TGACTCCGACTCAAATCCCAATCCCGCCTTCGATTTCAAGTCCTACATGCTCCGCAAGGCTAATTCCGTCAACCAGGCCCTCGACGCAGCCGTCCCACTC AAGGAGCCCGCTAAAATCCACGACTCCATGCGCTACTCCCTCCTGGCCGGGGGCAAGCGTGTCCGCCCTGTGCTCTGCCTCGCCGCCTGTGAATTGGTCG GCGGTACAGAGCCCATGGCTATGCCCGCAGCATGCGCCGTGGAGATGATACACACCATGTCCTTAATCCACGACGATCTCCCCTGTATGGACAACGACGA CCTCCGCCGAGGTAAACCGACCAACCATATAGTGTACGGTAAGCCGACCAACCATATAGTGTGCGGGGAGAGCGTGGCCGTTTTGGCTGGCGACGCGCTG CTTGCGTTCGCCTTCGAGCATATAGCTGTGGCGACGGTGAACGTGTCCCCGGGAAGGATAGTGAGGGCGATTGGGGAGCTGGCGAAAGTTATAGGAGGGG AAGGTTTGGTGGCGGGGCAGGTGGTGGACATATGCTCGGAAGGGAATTCAGAGGTTGGATTGGAAGAGCTGGAGTTCATCCACGTCCACAAGACGGCGAA ACTACTGGAAGGGTCGGTGGTGCTGGGGGCGATACTCGGCGGGGGTACGGACGACGAAGTGGAGAGGCTTAGGAGATACGCTAGGGGGATTGGGCTGTTG TTTCAAGTGGTTGATGACATACTTGATGTGACGAAATCGTCTCAGGAATTGGGGAAGACTGCTGGTAAGGATTTGGTGGCGGATAAGGTGACTTACCCGA AGCTGATGGGGATTGATAAATCCAAGGAGTTTGCAGAGAAGTTGAACCAGGAAGCTAAGGAGCAGCTTGTTGGGTTTGATCCTCACAAAGCTGCTCCTTT GATTGCTTTAGCTAATTACATTGCTTACAGGCAGAATTAA
AA sequence Show only first row Show all	>Lus10016803 pacid=23149160 polypeptide=Lus10016803 locus=Lus10016803.g ID=Lus10016803.BGIv1.0 annot-version=v1.0 MSCSSSSVHLGCWVHTSSIFLTRSRSKSQSLTPPLKTLSIPLRRHRRISTASAVLTREDKESSSSLHDSDSNPNPAFDFKSYMLRKANSVNQALDAAVPL KEPAKIHDSMRYSLLAGGKRVRPVLCLAACELVGGTEPMAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHIVYGKPTNHIVCGESVAVLAGDAL LAFAFEHIAVATVNVSPGRIVRAIGELAKVIGGEGLVAGQVVDICSEGNSEVGLEELEFIHVHKTAKLLEGSVVLGAILGGGTDDEVERLRRYARGIGLL FQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLMGIDKSKEFAEKLNQEAKEQLVGFDPHKAAPLIALANYIAYRQN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10016803 [exp]	0	1
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10022499 [exp]	1.0	0.9353
AT2G38270		ATGRX2, CXIP2	GLUTAREDOXIN, CAX-interacting ...		Lus10002847 [exp]	5.7	0.8990
AT2G37920		EMB1513	embryo defective 1513, copper ...		Lus10024339 [exp]	7.5	0.8884
AT1G31330		PSAF	photosystem I subunit F (.1)		Lus10018273 [exp]	12.6	0.8865
AT5G52010	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10018728 [exp]	15.1	0.8507
AT5G52010	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10024807 [exp]	17.7	0.8130
AT3G27830		RPL12-A	ribosomal protein L12-A (.1)		Lus10013078 [exp]	18.0	0.8782
AT1G31330		PSAF	photosystem I subunit F (.1)		Lus10040639 [exp]	20.0	0.8721
AT3G27750		EMB3123	EMBRYO DEFECTIVE 3123, unknown...		Lus10038297 [exp]	22.8	0.8459
AT5G18660		PCB2, DVR	PALE-GREEN AND CHLOROPHYLL B R...		Lus10037912 [exp]	23.4	0.8599

Compare expression of checked genes

Lus10016803 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.