Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65160 582 / 0 TPR14 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) AT5G10090 547 / 0 TPR13 tetratricopeptide repeat 13, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G78120 354 / 7e-116 TPR12 tetratricopeptide repeat 12, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G42580 312 / 1e-97 VIT, TTL3 VHI-INTERACTING TPR CONTAINING PROTEIN, tetratricopetide-repeat thioredoxin-like 3 (.1) AT3G58620 295 / 2e-91 TTL4 tetratricopetide-repeat thioredoxin-like 4 (.1) AT1G53300 278 / 1e-84 TTL1 tetratricopetide-repeat thioredoxin-like 1 (.1) AT3G14950 273 / 1e-82 TTL2 tetratricopetide-repeat thioredoxin-like 2 (.1) AT5G12430 92 / 3e-19 TPR16 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) AT2G41520 75 / 1e-13 TPR15 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) AT4G30480 72 / 1e-13 TPR1, AtTPR1 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022500 [exp] 998 / 0 AT5G65160 652 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10028154 [exp] 287 / 4e-88 AT1G53300 754 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1) Lus10042854 [exp] 279 / 6e-85 AT1G53300 749 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1) Lus10019041 [exp] 76 / 6e-14 AT5G12430 787 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Lus10031418 [exp] 67 / 1e-11 AT1G56440 436 / 1e-150 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10041189 [exp] 67 / 1e-11 AT1G04190 516 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035117 [exp] 66 / 1e-11 AT4G30480 291 / 3e-99 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10031983 [exp] 67 / 3e-11 AT4G30480 222 / 9e-76 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10022603 [exp] 64 / 2e-10 AT3G54010 831 / 0.0 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G076800 [exp] 639 / 0 AT5G65160 619 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.007G091200 [exp] 633 / 0 AT5G65160 570 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.002G094800 [exp] 440 / 3e-148 AT5G65160 451 / 2e-152 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.005G166300 [exp] 421 / 2e-139 AT5G65160 436 / 5e-145 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.011G111500 [exp] 306 / 3e-95 AT1G53300 707 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1) Potri.001G392601 [exp] 137 / 4e-35 AT1G53300 260 / 1e-79 tetratricopetide-repeat thioredoxin-like 1 (.1) Potri.009G050200 [exp] 91 / 1e-18 AT5G12430 821 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Potri.001G255000 [exp] 91 / 1e-18 AT5G12430 738 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Potri.018G100700 [exp] 69 / 8e-13 AT4G30480 303 / 8e-104 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.005G014100 [exp] 71 / 1e-12 AT1G56440 476 / 1e-165 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF07719 [flax] [poplar] TPR_2 Tetratricopeptide repeat CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10016804 pacid=23149103 polypeptide=Lus10016804 locus=Lus10016804.g ID=Lus10016804.BGIv1.0 annot-version=v1.0 ATGGCGGATACGGAGGATCCTTCACCTGATAAGAAATCAGGATGCGGCCTATTACGCGCTGTGTTCGGGAAAAAGGGCACTGGAGGAATATGGGCAAGGA GAGGTACATCAACCGGCTCAATCCCAACTATTGTCCCCGCCGCTGAGACCGCCGGCAAACCACCTTACAATTTAGGCAAGTCACCTAGCTTTACCAAGAG ACGAAAGAACTCCGATGAAGCTGCTGCAGGAATCCACCAGAAATCATCCATCCATCCCAAGAGTATTCCTCCTCCTTCGCATCATCCTCATCACCACATG ACCAAACTTGTCAAGGAACAGCCTGCAGTAGCATCCAGAACAACAAACAAGGTTATTAACATGAATAATAATAGTGCTAGTCATAATAAGAAAGTTCCCA AAGAAACAATCAGCATCTCCGAGGAGCTGGAGAGCATGATCAATGATCACCAAAGGAGCAACAACAGCCATTTGGTACGTGCTTCATCCAGCAATGTTAT GCTTTATGGGAATCTCGGGAACTTGAGGCAGCAAGGAGAATACAACACCACCACCAGCAATACTCGGTATCACCCTCCTCCTCCTCCTAATAACGTGATG AAGAAACAGAATGATTACCAGAGCCAGGAGGCACCCCCGACTTCTCTATGCAGGGCTTTGTCGACTAGAATGGATCCCGAGCAGCTTAAGATGATGGGTA ACGAGGATTATAAGAACGGTAATTTCGCTGAGGCTTTGGCTCTATACGAAGCCGCCATTGCCATCGACCCAAACAAGGCTTCCTACCGGAGCAACAAAAG CGCTGCGTTAACTGCTCTCGGTAGGATCCTTGATGCTGTTTTTGAGTGTAGAGAGGCCATCCGGATCGAACCCACTTACCATCGGGCTCATCATCGCCTC GCTAACTTGTACCTCAGGTTAGGAGACGTGGAGAAATCGATCTATCATTACAAACACGCAGGGCCAGAGGCGGATCACGTTGACATTTCCAAAGCCAAAG CTCTACAACTTCACCTCAACAAATGTACAGAGGCCAGGAGGATGAGAGATTGGAACACTCTCATCAAAGAAACACAAGCTGCCATCTCAGGTGGAGCAGA TTCAGCGCCCCAAATATACGCATTGCAAGCTGAGGCGCTGTTGAAGCACAATAAACACCAAGAAGCCAACGACGCTATGAACAGAAGTTCCAATTTCAAT GCAGATGCTTGTACCAGATTCTTCGGTCCCATTGCCAGTGCCAGTATCTTAGCGGTCCGAGCTCAGGTAGACATGGCAATGGGAAGGTTCGAGGAGGCAT TGACGGCAGCACAAAGAGCGACGAGGCTAGATGCAAACAACAGGGAAGGCAATATGGCGATGAGAAAAGCAAGAGCAGTACGAGCAGCTCGAGCCAAAGG GAATGAGCTTTTCAATGCTGGCAAGTTCCAAGAGGCATCAGCAGCGTATGGAGAAGGACTTGAGCACGATCCTCACAACTCTGTATTGCTCTGCAACCGA GCAGCCTGTCGTTCCAAGCTCGGCCACTTGGACAAGGCTGTGGACGACTGCACATCTGCTCTCAACCTCCGCCCTGGATATGCCAAAGCTAGGCTAAGAA GAGCTGACTGCTACTCCAAGTTGGAGAAATGGGAAGCTTCAATACAAGACTACGAGTTGCTGCACAAAATATCACCAGAGGATGAAGAGGTCAGGCAGGG GTTGTTGGACGCCAAGTCAAGAATGAGGAAGCAAAGAGGAGGTGACAACTAA
AA sequence Show only first row Show all	>Lus10016804 pacid=23149103 polypeptide=Lus10016804 locus=Lus10016804.g ID=Lus10016804.BGIv1.0 annot-version=v1.0 MADTEDPSPDKKSGCGLLRAVFGKKGTGGIWARRGTSTGSIPTIVPAAETAGKPPYNLGKSPSFTKRRKNSDEAAAGIHQKSSIHPKSIPPPSHHPHHHM TKLVKEQPAVASRTTNKVINMNNNSASHNKKVPKETISISEELESMINDHQRSNNSHLVRASSSNVMLYGNLGNLRQQGEYNTTTSNTRYHPPPPPNNVM KKQNDYQSQEAPPTSLCRALSTRMDPEQLKMMGNEDYKNGNFAEALALYEAAIAIDPNKASYRSNKSAALTALGRILDAVFECREAIRIEPTYHRAHHRL ANLYLRLGDVEKSIYHYKHAGPEADHVDISKAKALQLHLNKCTEARRMRDWNTLIKETQAAISGGADSAPQIYALQAEALLKHNKHQEANDAMNRSSNFN ADACTRFFGPIASASILAVRAQVDMAMGRFEEALTAAQRATRLDANNREGNMAMRKARAVRAARAKGNELFNAGKFQEASAAYGEGLEHDPHNSVLLCNR AACRSKLGHLDKAVDDCTSALNLRPGYAKARLRRADCYSKLEKWEASIQDYELLHKISPEDEEVRQGLLDAKSRMRKQRGGDN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65160		TPR14	tetratricopeptide repeat 14, t...		Lus10016804 [exp]	0	1
AT2G38970			Zinc finger (C3HC4-type RING f...		Lus10023527 [exp]	2.4	0.8424
AT4G23740			Leucine-rich repeat protein ki...		Lus10032351 [exp]	2.8	0.8886
AT2G40070			unknown protein		Lus10030402 [exp]	9.2	0.8358
AT2G42080			Chaperone DnaJ-domain superfam...		Lus10016258 [exp]	14.4	0.8366
AT3G52890		KIPK	KCBP-interacting protein kinas...		Lus10006273 [exp]	16.1	0.8431
AT1G31320	AS2	LBD4	LOB domain-containing protein ...		Lus10040638 [exp]	17.5	0.7928
AT4G17950	AT-hook		AT hook motif DNA-binding fami...		Lus10030962 [exp]	18.7	0.8171
AT3G19330			Protein of unknown function (D...		Lus10031977 [exp]	20.3	0.8062
AT2G36350			Protein kinase superfamily pro...		Lus10020571 [exp]	22.1	0.8154
AT5G42560			Abscisic acid-responsive (TB2/...		Lus10034519 [exp]	24.8	0.8105

Compare expression of checked genes

Lus10016804 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.