Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39740 328 / 7e-114 HCC2 homologue of copper chaperone SCO1 2, Thioredoxin superfamily protein (.1) AT3G08950 162 / 4e-48 HCC1 homologue of the copper chaperone SCO1, electron transport SCO1/SenC family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022501 [exp] 185 / 3e-59 AT4G39740 76 / 3e-17 homologue of copper chaperone SCO1 2, Thioredoxin superfamily protein (.1) Lus10002848 [exp] 99 / 9e-26 AT3G08950 170 / 4e-53 homologue of the copper chaperone SCO1, electron transport SCO1/SenC family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G091300 [exp] 349 / 4e-122 AT4G39740 310 / 1e-106 homologue of copper chaperone SCO1 2, Thioredoxin superfamily protein (.1) Potri.005G076700 [exp] 339 / 3e-118 AT4G39740 328 / 1e-113 homologue of copper chaperone SCO1 2, Thioredoxin superfamily protein (.1) Potri.016G118700 [exp] 180 / 7e-55 AT3G08950 352 / 1e-121 homologue of the copper chaperone SCO1, electron transport SCO1/SenC family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF02630 [flax] [poplar] SCO1-SenC SCO1/SenC
Representative CDS sequence Show only first row Show all	>Lus10016805 pacid=23149158 polypeptide=Lus10016805 locus=Lus10016805.g ID=Lus10016805.BGIv1.0 annot-version=v1.0 ATGATGCCCCTTTCTCAGTTTTTTTTCTTCGCATCCAAATATCCGCTAAGGCAGAATCAGGCTCTCACTCAACTTCGAAGGTTTGCTGCATCAAGGAAGA ATCAGTCTCGTAGCTATTTCAAATCTAACAAGGAAGGTCATGAAAACCGGGATACTCATCATATATATCCTGTTGAACAGAAGCCTCATCAATCTTATGC TTCGTTCATCCTTCCTGGTGCTGTACTAGGATTTGCTGGACTGGCAGCTTATATTCATTATAATGACGAGAAGAGAGCAATTCCGAAGGGTGAAGCCAAG ACTCAGCTTTTTACCCCAGGTCCAGTTATTGGTGGTCCATTCTCTCTGATTGATACTGAGAAGCGGGTGGTAACACAGAACGATTTTCTGGGAAAGTGGG TTCTGCTATACTTTGGTTATACAGCCTCCCCTGATGTTGGCCCTGATCAAATACAAACCATGGCCAAGGCCATTGATATACTAGAATCACAGGAGAATCT CAAGATCCTGCCCGTGTTTGTCACAATCGATCCTCAACGTGATACTCCTGCACATTTGCGTGCTTATCTCAAAGAGTTTGACCCCAGGATCTTAGGATTG ACAGGACAAGTTAGTGCTGTGAGGCAGATGGCGCAAGAGTACCGAGTTTTCTTCAGGAAGGTTGATGAAGATAAAGAAGATTATCTCGTAGAGACATCAC ACAATCTATATCTGATCGATCCAAAGATGGAGGTGGTGAGAACATTTGGGCTGGAGTACAATGAAGAGCATCTAAGTGAAGCAATTGTAAAAGAAATGAA GAGAAAATCGGCTTCAGAATCAGATTAA
AA sequence Show only first row Show all	>Lus10016805 pacid=23149158 polypeptide=Lus10016805 locus=Lus10016805.g ID=Lus10016805.BGIv1.0 annot-version=v1.0 MMPLSQFFFFASKYPLRQNQALTQLRRFAASRKNQSRSYFKSNKEGHENRDTHHIYPVEQKPHQSYASFILPGAVLGFAGLAAYIHYNDEKRAIPKGEAK TQLFTPGPVIGGPFSLIDTEKRVVTQNDFLGKWVLLYFGYTASPDVGPDQIQTMAKAIDILESQENLKILPVFVTIDPQRDTPAHLRAYLKEFDPRILGL TGQVSAVRQMAQEYRVFFRKVDEDKEDYLVETSHNLYLIDPKMEVVRTFGLEYNEEHLSEAIVKEMKRKSASESD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39740		HCC2	homologue of copper chaperone ...		Lus10016805 [exp]	0	1
AT4G27680			P-loop containing nucleoside t...		Lus10008835 [exp]	3.9	0.8267
AT3G28760			unknown protein		Lus10005250 [exp]	8.8	0.8096
AT1G73090			unknown protein		Lus10037331 [exp]	13.9	0.7820
AT1G11780			oxidoreductase, 2OG-Fe(II) oxy...		Lus10037023 [exp]	15.4	0.7114
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10004188 [exp]	19.9	0.7976
AT3G12170			Chaperone DnaJ-domain superfam...		Lus10026315 [exp]	20.3	0.7864
AT5G52880			F-box family protein (.1)		Lus10027549 [exp]	20.6	0.8025
AT1G36320			unknown protein		Lus10033109 [exp]	23.7	0.7857
AT5G45600		TAF14b, GAS41	TBP-ASSOCIATED FACTOR 14B, GLI...		Lus10007555 [exp]	24.0	0.7926
AT1G73350			unknown protein		Lus10042294 [exp]	28.7	0.7967

Compare expression of checked genes

Lus10016805 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.