Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39810 298 / 1e-101 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT5G07710 261 / 2e-84 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G74390 262 / 3e-84 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2) AT5G61390 257 / 2e-82 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022503 [exp] 585 / 0 AT4G39810 305 / 2e-104 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10019078 [exp] 268 / 2e-86 AT5G61390 528 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10015719 [exp] 266 / 1e-85 AT5G61390 541 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10000567 [exp] 254 / 3e-81 AT5G61390 480 / 8e-167 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G079100 [exp] 373 / 5e-131 AT4G39810 344 / 3e-120 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.007G088500 [exp] 319 / 2e-110 AT4G39810 311 / 3e-108 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.015G062000 [exp] 263 / 8e-85 AT5G61390 543 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF00929 [flax] [poplar] RNase_T Exonuclease
Representative CDS sequence Show only first row Show all	>Lus10016807 pacid=23149094 polypeptide=Lus10016807 locus=Lus10016807.g ID=Lus10016807.BGIv1.0 annot-version=v1.0 ATGGAAGAGCACAACATTACGTCGTCAGGTCCCCAGATTGTTTTCTTCGACCTCGAAACAACCGTTCCCACCCGATCCGCAGGCAGGTTCCACGTGCTGG AGTTCGGGGCCATCGTGGTTTGCCCCAGGAAGCTGGTGGAGCTGTGGAGCTACACCACGCTCATACGCACCACGGATTTGACCGTGGTGTCGGTACGATC GGGCCGGCCGGAGGGAATAACCAGGGCGGCGGTGGCAGGGGCGCCCACGTTCGAGGAAGTTGCGGACAGGATATTTGAGATCCTGAATGGGAGGATATGG GCAGGGCATAATATTCATAGGTTTGACATGGTTCGAATCAAGGAGGCGTTCGCGGAGATCGGACGGCCCGCTCCTATCCCCGTTGGGAGCATTGATTCGT TGGGAGTGCTTACCCAGAGATTTGGAAGACGTGCCGGCAACATGAAGATGGCAACGTTGGCGACATACTTTGGGCTAGGCCAACAAAAGCACAGAAGCCT CGATGATGTCCGAATGAACTTGGAAGTGCTGAAGCATTGTGCAACCGTGCTTTTCTTGGAATCAAGCCTTCCAGCAGGATTGTTGAGGAATGGTAACGGA TCAGAATGGCAGCATCAGCATCAGAAGGGATGTTCGGCGGTTGTAACGCGGAGTAGAAGCGTTCAGATTTGTAAGGACATTACCTTACCTACACCTACAA CAAGAAAATCTCCACCAACTGCGACTGCAACTAGTCTCTCTTACCAAAGGCCACTTCCATATGCCAGGGGAAGCAGCAGCAGCAGCTTCGGCAAGATGAC AGAAGGGATGAAGAGCTTGTTGTGTAGAGCACGAGAGACAAGATCCATCACCAGATTACTCAAGCATTCCCAATCGCTGCTCAGATGA
AA sequence Show only first row Show all	>Lus10016807 pacid=23149094 polypeptide=Lus10016807 locus=Lus10016807.g ID=Lus10016807.BGIv1.0 annot-version=v1.0 MEEHNITSSGPQIVFFDLETTVPTRSAGRFHVLEFGAIVVCPRKLVELWSYTTLIRTTDLTVVSVRSGRPEGITRAAVAGAPTFEEVADRIFEILNGRIW AGHNIHRFDMVRIKEAFAEIGRPAPIPVGSIDSLGVLTQRFGRRAGNMKMATLATYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLESSLPAGLLRNGNG SEWQHQHQKGCSAVVTRSRSVQICKDITLPTPTTRKSPPTATATSLSYQRPLPYARGSSSSSFGKMTEGMKSLLCRARETRSITRLLKHSQSLLR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39810			Polynucleotidyl transferase, r...		Lus10016807 [exp]	0	1
AT5G46530			AWPM-19-like family protein (....		Lus10015255 [exp]	3.0	0.8974
AT4G16400			unknown protein		Lus10039068 [exp]	8.8	0.8957
AT4G39810			Polynucleotidyl transferase, r...		Lus10022503 [exp]	10.7	0.8348
AT5G46530			AWPM-19-like family protein (....		Lus10025374 [exp]	11.0	0.8716
AT4G21310			Protein of unknown function (D...		Lus10018386 [exp]	12.5	0.8481
AT5G22870			Late embryogenesis abundant (L...		Lus10016161 [exp]	14.8	0.8783
AT5G19590			Protein of unknown function, D...		Lus10033088 [exp]	15.2	0.7871
AT5G46530			AWPM-19-like family protein (....		Lus10004587 [exp]	19.2	0.8749
AT1G79900		ATMBAC2, BAC2	RABIDOPSIS MITOCHONDRIAL BASIC...		Lus10037544 [exp]	20.1	0.8275
AT5G22870			Late embryogenesis abundant (L...		Lus10021404 [exp]	22.8	0.8691

Compare expression of checked genes

Lus10016807 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.