Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022505 [exp] 594 / 0 AT1G22130 68 / 8e-13 AGAMOUS-like 104 (.1) Lus10016810 [exp] 56 / 1e-08 AT1G22130 239 / 5e-77 AGAMOUS-like 104 (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10016809 pacid=23149037 polypeptide=Lus10016809 locus=Lus10016809.g ID=Lus10016809.BGIv1.0 annot-version=v1.0 ATGCACAGCTCGGAGGGTGGAGGTAGAGCATCGTCATTGTCGAAGAGAAGGAGCAGTCTGATAAGGAAGGCAAATGAAATCTGTTTCTTTGGCGATGCTG ATGTTGCCTTCGTCGCCTTTTCACCTTGCGGCCGCCTTACCAAGTTTAGCAGCAAAAATAGAATTGAGGATATCCTACAGAAGTATGTTGATTTACCAGC TGGTCAAAGATACAAGATCCATCATTTGGAGCTGCAGATCAAGAAAGCGCAAGTGGATATCGAAATTCTCGATGCTAACCTCAGGGACTACGAGCTCCAC CCAGAACAACAATCTCATTCCCTGCCTCAACTGTTATGGTGTGAGAAAAACCTCAATCGCGAATTGCAGCGGGTTCTCCACAGAAAGAACCATCTCACTG GTAGTAACTGCTCATCTCCGTATAATGGCCGTCCATTTATGACTCGGAGGGATGTTTTGGAAAGGGGAAACCTGGGTTCAGTATCATCACAATTCAGTTC TTGTGGTGGAGAAGAGCTCACAAGACCAAACCAGAATCTGAGTTACAGCCAGCTCATCATGAAACTGGATCCTTGGATTAGTCCTTACAGTTCAAAGGTC CGTGACACAATCATTCGAGACATAATAAATGGACCCGACCCTGATCATAATGGTACTACTTCTGGACATTTTGGGGAATCCAGCTCCAGACCTGTTACTG ATCAAACTTGTCCTTTAGATGTTTTGTACAACACTAGTCCTCCCTTGGACAAGACCATCCCTGATTGCCATCTAAGCGACAGGCCTTTCGTTCCTACTCC CATGAATGTCACTTCTGGTGACAACTCAAACACCAATGTTGATGATGGGAACTATGGTGATGGTCCCAATACCAAGTATTCTGCTGCAGCTCCAACAAAT CCAACACCAGAAGATCCACCTCGCCTTCATGGTATTTCCTCAGAGGATGAGGTGGGGAATGGAGGATTTGGCAGTAGAACCAACCAGGAGTTTGGGTCTC CAGATTGGGATGGCTTCGTGCTGGCTGACAACCTCAACTTCGATGATCTTGATATTGTATTCTGA
AA sequence Show only first row Show all	>Lus10016809 pacid=23149037 polypeptide=Lus10016809 locus=Lus10016809.g ID=Lus10016809.BGIv1.0 annot-version=v1.0 MHSSEGGGRASSLSKRRSSLIRKANEICFFGDADVAFVAFSPCGRLTKFSSKNRIEDILQKYVDLPAGQRYKIHHLELQIKKAQVDIEILDANLRDYELH PEQQSHSLPQLLWCEKNLNRELQRVLHRKNHLTGSNCSSPYNGRPFMTRRDVLERGNLGSVSSQFSSCGGEELTRPNQNLSYSQLIMKLDPWISPYSSKV RDTIIRDIINGPDPDHNGTTSGHFGESSSRPVTDQTCPLDVLYNTSPPLDKTIPDCHLSDRPFVPTPMNVTSGDNSNTNVDDGNYGDGPNTKYSAAAPTN PTPEDPPRLHGISSEDEVGNGGFGSRTNQEFGSPDWDGFVLADNLNFDDLDIVF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22130	MADS	AGL104	AGAMOUS-like 104 (.1)		Lus10016809 [exp]	0	1
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Lus10041538 [exp]	1.4	0.9753
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Lus10024603 [exp]	2.8	0.9785
AT5G07280		EXS, EMS1	EXTRA SPOROGENOUS CELLS, EXCES...		Lus10014996 [exp]	6.0	0.9728
AT2G45480	GRF	ATGRF9	growth-regulating factor 9 (.1...		Lus10038002 [exp]	8.8	0.9737
AT1G71691			GDSL-like Lipase/Acylhydrolase...		Lus10001540 [exp]	9.5	0.9726
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Lus10032240 [exp]	10.2	0.9723
AT3G58530			RNI-like superfamily protein (...		Lus10012294 [exp]	10.7	0.9475
AT2G27880		AGO5	ARGONAUTE 5, Argonaute family ...		Lus10014386 [exp]	11.2	0.9723
AT1G75240	ZF_HD	ATHB33, ZHD5	zinc-finger homeodomain 5, hom...		Lus10014302 [exp]	11.2	0.9561
AT4G01290			unknown protein		Lus10039283 [exp]	12.6	0.9712

Compare expression of checked genes

Lus10016809 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.