Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22130 196 / 3e-60 MADS AGL104 AGAMOUS-like 104 (.1) AT1G77980 182 / 5e-55 MADS AGL66 AGAMOUS-like 66 (.1) AT1G77950 167 / 5e-50 MADS AGL67 AGAMOUS-like 67 (.1.2) AT4G09960 88 / 2e-20 MADS AGL11, STK SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) AT1G18750 89 / 8e-20 MADS AGL65, AGL102 AGAMOUS-like 65 (.1.2) AT3G58780 84 / 1e-18 MADS AGL1, SHP1 SHATTERPROOF 1, AGAMOUS-like 1, K-box region and MADS-box transcription factor family protein (.1.2.3) AT5G23260 82 / 3e-18 MADS ABS, TT16, AGL32 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3) AT5G13790 82 / 8e-18 MADS AGL15 AGAMOUS-like 15 (.1) AT2G42830 82 / 8e-18 MADS AGL5, SHP2 SHATTERPROOF 2, AGAMOUS-like 5, K-box region and MADS-box transcription factor family protein (.1.2) AT2G45660 76 / 7e-16 MADS ATSOC1, SOC1, AGL20 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022506 [exp] 536 / 0 AT1G22130 277 / 1e-91 AGAMOUS-like 104 (.1) Lus10024823 [exp] 124 / 3e-33 AT1G22130 142 / 3e-40 AGAMOUS-like 104 (.1) Lus10018714 [exp] 101 / 7e-25 AT1G22130 122 / 7e-33 AGAMOUS-like 104 (.1) Lus10019089 [exp] 100 / 2e-23 AT1G18750 279 / 3e-91 AGAMOUS-like 65 (.1.2) Lus10034464 [exp] 94 / 8e-21 AT1G18750 281 / 1e-88 AGAMOUS-like 65 (.1.2) Lus10008264 [exp] 89 / 3e-20 AT4G09960 328 / 3e-114 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10005302 [exp] 89 / 4e-20 AT4G09960 330 / 2e-115 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10017388 [exp] 86 / 3e-19 AT5G23260 220 / 4e-72 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10010184 [exp] 85 / 4e-19 AT5G23260 218 / 3e-71 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G087500 [exp] 315 / 1e-106 AT1G22130 229 / 9e-73 AGAMOUS-like 104 (.1) Potri.002G092300 [exp] 206 / 6e-64 AT1G22130 313 / 1e-105 AGAMOUS-like 104 (.1) Potri.015G098400 [exp] 86 / 1e-19 AT4G22950 136 / 4e-40 AGAMOUS-like 19 (.1) Potri.013G104900 [exp] 85 / 3e-19 AT4G09960 330 / 3e-116 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Potri.019G077200 [exp] 85 / 4e-19 AT4G09960 274 / 5e-94 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Potri.011G075800 [exp] 81 / 1e-17 AT4G18960 325 / 2e-113 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) Potri.002G151700 [exp] 80 / 3e-17 AT2G45660 212 / 8e-70 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) Potri.012G100200 [exp] 79 / 4e-17 AT1G26310 149 / 2e-44 CAULIFLOWER, AGAMOUS-like 10, K-box region and MADS-box transcription factor family protein (.1) Potri.002G109601 [exp] 79 / 5e-17 AT3G57230 299 / 1e-103 AGAMOUS-like 16 (.1.2) Potri.004G064300 [exp] 79 / 7e-17 AT4G18960 313 / 8e-109 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10016810 pacid=23149104 polypeptide=Lus10016810 locus=Lus10016810.g ID=Lus10016810.BGIv1.0 annot-version=v1.0 ATGGGCCGTGTCAAACTTCAGATAAAGCGGATAGAGAACATTACTAATCGTCAGGTCACTTTCTCCAAACGTAGAAATGGACTCATTAAAAAAGCTTATG AACTCGCCATTCTATGTGACATTGACATTGCTCTCATCATGTTCTCTCCTTCCGGCCGATTAAGTCATTTTTCCGGCAAGCGAAGAATTGAAGATGTCAT CGCTCGTTACATAAACCTCCCAGACCATGATCGTGAATGCCCAGAATCTACAAACTCGAACATTGAGGTGCTCCAGCAAGAAGTTTGTAGTTTGCAACGG CAACTACAGGTTGCTGAGGACCAATTGAACATGTATGAACCGAACCCTCTGAAATTCTCATCCATTGGGGACCTAGAGTCCTGCGAGAAGAACCTTTTAG ATTCGATGTCTCGTCTCGAGGAGCGCAAAAAGTATCTTCTGAGCAACCATGTCTCCACTTATGGCCATTCAAGCATGCAGATCCTATTTGACGGACAAGA TGGTCTTCCGAATTTCGACAGCGATATTGCGAATTGGTTGCCGGACAATGGACATAACCAGAACTCTGTTCATGTAGTGTCAGAGTCATCCTGCATTCCT GTCAGCAATCACTCGTCGGCAACAATATTTGAAGCACTTTCTCAAGGGAATGGAAATGTGGATCCTTGTAATAACATGGGAGGAGGAAACCATATGAACA GCTCAAATGGTGAGAGCATATCATCATGGAAGCAAGCTTTTTCATCACTGTCATCAACTGAGCTCCTTGCTGCCTTCTTGCCCCCAACTTCATTTGCTCC TATTAAGCAACAAGAGGTAGAAGGACCAAGCTATACATCAATGTTGCAGCAGCAGCAGCAGCAGCAAGCAGCAGATGCTCAATCAAACTGCCCTCAACAA CAAATTCAATCTACAAATGGAGGGGATGGTTCAGATTATGACCAGAATCTTTGCCCCCAGAGTTCAACTTGA
AA sequence Show only first row Show all	>Lus10016810 pacid=23149104 polypeptide=Lus10016810 locus=Lus10016810.g ID=Lus10016810.BGIv1.0 annot-version=v1.0 MGRVKLQIKRIENITNRQVTFSKRRNGLIKKAYELAILCDIDIALIMFSPSGRLSHFSGKRRIEDVIARYINLPDHDRECPESTNSNIEVLQQEVCSLQR QLQVAEDQLNMYEPNPLKFSSIGDLESCEKNLLDSMSRLEERKKYLLSNHVSTYGHSSMQILFDGQDGLPNFDSDIANWLPDNGHNQNSVHVVSESSCIP VSNHSSATIFEALSQGNGNVDPCNNMGGGNHMNSSNGESISSWKQAFSSLSSTELLAAFLPPTSFAPIKQQEVEGPSYTSMLQQQQQQQAADAQSNCPQQ QIQSTNGGDGSDYDQNLCPQSST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22130	MADS	AGL104	AGAMOUS-like 104 (.1)		Lus10016810 [exp]	0	1
					Lus10038209 [exp]	8.7	0.9855
					Lus10001854 [exp]	12.4	0.9850
AT5G41610		ATCHX18	cation/H+ exchanger 18, ARABID...		Lus10028748 [exp]	13.0	0.8876
AT1G18720			Protein of unknown function (D...		Lus10001647 [exp]	15.2	0.9845
					Lus10002449 [exp]	17.5	0.9845
AT5G36000			unknown protein		Lus10010122 [exp]	18.4	0.8856
AT5G13840		FZR3	FIZZY-related 3 (.1.2)		Lus10002972 [exp]	19.6	0.9845
AT5G12460			Protein of unknown function (D...		Lus10003179 [exp]	21.5	0.9845
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10029103 [exp]	22.6	0.8854
					Lus10003763 [exp]	23.2	0.9845

Compare expression of checked genes

Lus10016810 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.