Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39690 226 / 1e-65 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022509 [exp] 708 / 0 AT4G39690 416 / 1e-137 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G080200 [exp] 367 / 4e-119 AT4G39690 424 / 3e-140 unknown protein Potri.007G087100 [exp] 328 / 1e-104 AT4G39690 395 / 2e-129 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09731 [flax] [poplar] Mitofilin Mitochondrial inner membrane protein
Representative CDS sequence Show only first row Show all	>Lus10016813 pacid=23149153 polypeptide=Lus10016813 locus=Lus10016813.g ID=Lus10016813.BGIv1.0 annot-version=v1.0 ATGAGAAAGGATGTGGTACCCATCATTGGCGCGGATACCAAAAAATCAGATGATGTAGTGCCTGTGGAGCAACATGTTGCAACTGAGATTGATATTAATG TTGCTCGTATTGAAGACGAACCAAAGGTCATAACTCAAACACAACCTACTGTTGTTGAAGATGACAAGAAGGCTGAAATGCAAACCGACCTTCCTCAGCA AGAAGTTGAGAACAAGACAGAACCGCATTTGGATTTTGCACACAATAAAGCTGAGCAGAAGTATGATACGCAAATGTCTGGCCACCACCAAGATTCAGGC AGTGAACAAGGTGAAATCCCATCTCAAGCTGAAGAATTATCAAAACTAATTGTAGAAGATGCCACAAGTGCTCTCGGGGGAAATCAAGAACCGCAAGTCC CCACAACATTAAGGTCTGAAAGTAGTCCTCGCACAGTAAATGCAGAGTCAGCATCTAGTGAAGAGCCTAATAATGAAGTTGAAGTTTCATCTATTCCGAA AGAAGGTGAAATAAAGACACGATCCGCTGATCATTCTGCTGAAACATTAAAATCAGAGTCTGAACTTGGCGAAGGTGTTGGTGCACCAAATCTTCTCAAC ACTTACCATCTCAAGGAAAATACTGAAGTAATGCCTTCAACTGAGGCTCCAGGGGAAGAGTCTGAACTTGGCGAAGGTGTTGGTGCACCAAATCTTCTCA ACACTTACCATCTCAAGGAAAATACTGAAGTAATGCCTTCAACTGAGGGTCCAGGGGAAGAGGGTAGCACCGAGGAATCTGCTGAAGGTTACATAACAAA AGATGGAAAGTTGGTTATGGATTTTCTTCAAGCCATTCATGCTGCCGAAAAGATGCAACATGAATTAGATGCTCGTGTTTTTACTGGAGAAAAAAGAGCG TTGCAGGAAAAGTATGAAAAGCAATTGAGGGATTCAAGGGTGAGGGAACTTATGCTCGCAGAAGAGGCTGCAATGTTAGACAAGGAAATCAAGAGAGAGA GGGCAAAAGCAGCAGCTGCAGTGAGAGCTGTTGAGGAGAAATTGGAAAAGAAACTGAGACTGGAACTTGAGCAAAAGGAAGCTGAATCAGAGACTAAGAT GAAGCAGGTTCAGGAGTTGGCTAAAGCAGAACTGGCTGCAGCTATTGCAAGTGAGAAGGCTGCACAAATCAAAAGAATTGCTGAGGCTAATCTTCATGGT GCACTTGCATTAAAAGATGCACTCTCTCAAGGTCTACCCATCCAGAAAGAGCTGGAAGCGTTGGGCACCTTTCTGGAAGGCACGGATAAAGAGTCGCTGG TCCAACTTGTCCTGTCAACTCTTCCTGAAGAAACACGTCACACTGGAACAGACACTGTGTTACAGTTAAATCAAAAGTTCAATGCCCTGAAAGGAACACT CCGACATCACATTCTCATCCCTCCAGGTGGTGGCGGTATCTTAACACATGCTATGGCGCAGATAGCATCTTGGTTAAGGCTGAAAGAAGTGGATCCATCT GGAGATGGGATAGAGTCTGTGATCAGTAACGTCCAGACTCTCCTATCTGAGGGAAAGCTGGCTGAAGCAGCGGTTGCTCTTCAAGAAGGCGTAGGAGGGA GCCAAGCCGAGCAGGTTGCAAGCGACTGGGTAAGGCGTGCCAAGAACAGAGCCATCACTGAACAAGCTCTAACCGTACTTCAGTCATATGCTACCTGCAT CAGTCTTACTCGATCATAG
AA sequence Show only first row Show all	>Lus10016813 pacid=23149153 polypeptide=Lus10016813 locus=Lus10016813.g ID=Lus10016813.BGIv1.0 annot-version=v1.0 MRKDVVPIIGADTKKSDDVVPVEQHVATEIDINVARIEDEPKVITQTQPTVVEDDKKAEMQTDLPQQEVENKTEPHLDFAHNKAEQKYDTQMSGHHQDSG SEQGEIPSQAEELSKLIVEDATSALGGNQEPQVPTTLRSESSPRTVNAESASSEEPNNEVEVSSIPKEGEIKTRSADHSAETLKSESELGEGVGAPNLLN TYHLKENTEVMPSTEAPGEESELGEGVGAPNLLNTYHLKENTEVMPSTEGPGEEGSTEESAEGYITKDGKLVMDFLQAIHAAEKMQHELDARVFTGEKRA LQEKYEKQLRDSRVRELMLAEEAAMLDKEIKRERAKAAAAVRAVEEKLEKKLRLELEQKEAESETKMKQVQELAKAELAAAIASEKAAQIKRIAEANLHG ALALKDALSQGLPIQKELEALGTFLEGTDKESLVQLVLSTLPEETRHTGTDTVLQLNQKFNALKGTLRHHILIPPGGGGILTHAMAQIASWLRLKEVDPS GDGIESVISNVQTLLSEGKLAEAAVALQEGVGGSQAEQVASDWVRRAKNRAITEQALTVLQSYATCISLTRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39690			unknown protein		Lus10016813 [exp]	0	1
AT1G10840		TIF3H1	translation initiation factor ...		Lus10007054 [exp]	1.0	0.8152
AT5G08120		MPB2C, ATMBP2C,...	movement protein binding prote...		Lus10034653 [exp]	4.6	0.7681
AT5G54580			RNA-binding (RRM/RBD/RNP motif...		Lus10014802 [exp]	5.3	0.7877
AT1G52980		AtNug2	nuclear/nucleolar GTPase 2, GT...		Lus10023835 [exp]	13.6	0.8085
AT3G25520		PGY3, ATL5, OLI...	RIBOSOMAL PROTEIN L5 A, PIGGYB...		Lus10020612 [exp]	15.6	0.7967
AT5G22370		QQT1, EMB1705	QUATRE-QUART 1, EMBRYO DEFECTI...		Lus10018675 [exp]	18.2	0.7595
AT3G57000			nucleolar essential protein-re...		Lus10032054 [exp]	26.7	0.7721
AT2G42810		AtPP5, PP5.2, P...	Arabidopsis thaliana protein p...		Lus10031381 [exp]	34.5	0.7445
AT1G14620		XTR2, EXGT-A2, ...	decoy (.1.2)		Lus10012875 [exp]	34.6	0.7488
AT1G04945			HIT-type Zinc finger family pr...		Lus10026116 [exp]	36.7	0.7603

Compare expression of checked genes

Lus10016813 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.