Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15120 41 / 0.0002 VQ motif-containing protein (.1) AT3G22160 40 / 0.0002 VQ motif-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006941 [exp] 40 / 0.0005 AT1G35830 93 / 3e-21 VQ motif-containing protein (.1) Lus10024738 [exp] 40 / 0.0006 AT1G35830 92 / 3e-21 VQ motif-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G075800 [exp] 63 / 3e-12 AT3G22160 54 / 8e-09 VQ motif-containing protein (.1) Potri.001G158800 [exp] 50 / 1e-07 AT4G39720 58 / 6e-10 VQ motif-containing protein (.1) Potri.005G076600 [exp] 43 / 6e-05 AT5G65170 70 / 7e-13 VQ motif-containing protein (.1) Potri.005G166100 [exp] 39 / 0.0008 AT5G65170 94 / 8e-21 VQ motif-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05678 [flax] [poplar] VQ VQ motif
Representative CDS sequence Show only first row Show all	>Lus10016814 pacid=23149146 polypeptide=Lus10016814 locus=Lus10016814.g ID=Lus10016814.BGIv1.0 annot-version=v1.0 ATGAACGATTACAATACTGGTGGTGATGATCAGTACTGGTTTGATAATAATATTACTGTTGGATCCTCCGACAACATGGCGGCGGCTGCTGGGACCAGTA CTGGTAATCACAGAAGCAGCAGCAGCAGCAGCAGCAAGCCGATTAGGAGGAGGTCGAGGGTGTCAAAGAAGACCCCAATAACACTCCTCAACACAGACGC CACCAACTTCAGATCCCTCGTCCAGCAGTTCACTGGCTGTCCCCACCCACTGCCGCCCACGTCGACCTCTTTCCAAACGGCGCCGTTGGATACCAATCGC GGACCCCTCAACTTGAACTTCCAGCTCGGGACCGTTCAAACCAGCAATCATCAGCAGCTACCTAGTAATATTACTGGTCAGTCGTCGTCTATGGTTAATT ATCGTGATGGTGCTGCTGATGAGATAACGAGAAATATTAGTGGAGGTCACAATCATATGGAGATGGTGCAGGAGTTGCTTATGGTGGATGACTCCCAGGA TGACTTTGGGTTGTTCAGATAA
AA sequence Show only first row Show all	>Lus10016814 pacid=23149146 polypeptide=Lus10016814 locus=Lus10016814.g ID=Lus10016814.BGIv1.0 annot-version=v1.0 MNDYNTGGDDQYWFDNNITVGSSDNMAAAAGTSTGNHRSSSSSSSKPIRRRSRVSKKTPITLLNTDATNFRSLVQQFTGCPHPLPPTSTSFQTAPLDTNR GPLNLNFQLGTVQTSNHQQLPSNITGQSSSMVNYRDGAADEITRNISGGHNHMEMVQELLMVDDSQDDFGLFR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39720			VQ motif-containing protein (....		Lus10016814 [exp]	0	1
					Lus10011681 [exp]	15.5	0.9305
AT2G47710			Adenine nucleotide alpha hydro...		Lus10006703 [exp]	15.7	0.9273
AT1G35210			unknown protein		Lus10036476 [exp]	16.2	0.9429
AT1G56300			Chaperone DnaJ-domain superfam...		Lus10029862 [exp]	18.5	0.9258
AT4G17500	AP2_ERF	ATERF-1, AtERF1	ethylene responsive element bi...		Lus10015296 [exp]	24.0	0.9385
AT3G48140			B12D protein (.1)		Lus10036977 [exp]	28.8	0.9379
AT2G18210			unknown protein		Lus10041771 [exp]	31.6	0.9231
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Lus10019635 [exp]	33.6	0.9228
AT1G21326			VQ motif-containing protein (....		Lus10029768 [exp]	35.9	0.9062
AT3G48140			B12D protein (.1)		Lus10015825 [exp]	41.7	0.8988

Compare expression of checked genes

Lus10016814 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.