Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09995 216 / 4e-70 unknown protein AT1G08530 102 / 6e-26 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035858 [exp] 456 / 5e-165 AT5G09995 214 / 1e-69 unknown protein Lus10042523 [exp] 100 / 3e-25 AT1G08530 263 / 2e-88 unknown protein Lus10021985 [exp] 97 / 2e-23 AT1G08530 256 / 3e-85 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G081800 [exp] 240 / 1e-79 AT5G09995 246 / 5e-82 unknown protein Potri.013G052700 [exp] 106 / 2e-27 AT1G08530 277 / 1e-93 unknown protein Potri.019G030400 [exp] 100 / 3e-25 AT1G08530 266 / 1e-89 unknown protein Potri.010G003700 [exp] 47 / 3e-06 AT5G09995 49 / 3e-07 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016816 pacid=23149163 polypeptide=Lus10016816 locus=Lus10016816.g ID=Lus10016816.BGIv1.0 annot-version=v1.0 ATGATTAGTGCTGCAATGTTGCAGGTTCCCAGTCATCCGTTGCCGTTTCCCAATTTCAGCCACCGTTTCAGCGCCGTTCCGTTGCTTCGTCTGCATATTG GACGTCTTCCGCCACTCTCCCTGCGGTCTCACTTCGGTGTTAACGCTGCAGAGCTGTCAATTTCATCCGGGTACACCGAGTCCGTCGGATCAGCTACAAT TCCTGCTTCTATACTTGACCACAACCTCACCCAACGCCATGTCCTCTTCCTTAATGTCTTCGCTTGCGCGGCAGCAGTTTCAGCGACCTGGGTATTCCTC TCTGCCATTCCAACTCTCTTGGCTTTTAAGAGAGCAACTGAGTCACATCAGAAACTGATGGATGTAACTAGGGAAGAGCTCCCCAGTACAATGGCTGCCA TTCGCTTATCCGGTATGGAGATCAGTGACCTAACAATGGAGCTCAGCGATCTAGGTCGAGAGATTACCCAGGGCGTTAAAGGCTCGACTAGGGCAGTTGG TATGGCAGAAGAGAAGCTTCGCGGATTCATGAATATGGCTTCTTCTCCACCAGCTACGTTGCAGAAGGTAGCAACAAATCCAGTAAGTAAGAAGGAAGAA GCAGGTTTGGCACGTTCGGCAAGGGGGTTGAAGGAGGGGATTGTGAAAGGCAGGTCATTCTTCCAACTATTTCTCACCCTCACCGGCATCATCAGGTTGG CACTTGGTTATTTTGCAAAGCGGGGTAAGAGGAAGAAGTGA
AA sequence Show only first row Show all	>Lus10016816 pacid=23149163 polypeptide=Lus10016816 locus=Lus10016816.g ID=Lus10016816.BGIv1.0 annot-version=v1.0 MISAAMLQVPSHPLPFPNFSHRFSAVPLLRLHIGRLPPLSLRSHFGVNAAELSISSGYTESVGSATIPASILDHNLTQRHVLFLNVFACAAAVSATWVFL SAIPTLLAFKRATESHQKLMDVTREELPSTMAAIRLSGMEISDLTMELSDLGREITQGVKGSTRAVGMAEEKLRGFMNMASSPPATLQKVATNPVSKKEE AGLARSARGLKEGIVKGRSFFQLFLTLTGIIRLALGYFAKRGKRKK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09995			unknown protein		Lus10016816 [exp]	0	1
AT3G10070		TAF12, TAFII58	TATA-ASSOCIATED FACTOR II 58, ...		Lus10003250 [exp]	1.4	0.9216
AT1G75330		OTC	ornithine carbamoyltransferase...		Lus10033203 [exp]	2.4	0.9330
AT3G20060		UBC19	ubiquitin-conjugating enzyme19...		Lus10005014 [exp]	4.9	0.8944
AT1G70280			NHL domain-containing protein ...		Lus10029176 [exp]	5.7	0.8988
AT5G61930		APO3	ACCUMULATION OF PHOTOSYSTEM ON...		Lus10004105 [exp]	7.4	0.8826
AT3G61530		PANB2	Phosphoenolpyruvate carboxylas...		Lus10010142 [exp]	7.7	0.8652
AT5G10270		CDKC;1	cyclin-dependent kinase C;1 (....		Lus10022043 [exp]	7.7	0.9005
AT1G13170		ORP1D	OSBP(oxysterol binding protein...		Lus10036949 [exp]	8.6	0.8626
AT5G05730		JDL1, WEI2, TRP...	WEAK ETHYLENE INSENSITIVE 2, T...		Lus10014842 [exp]	10.6	0.8775
AT1G50660			unknown protein		Lus10021521 [exp]	12.8	0.8972

Compare expression of checked genes

Lus10016816 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.