Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22010 1356 / 0 RKP related to KPC1 (.1.2) AT4G09340 54 / 3e-07 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) AT1G35470 54 / 7e-07 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) AT4G03965 46 / 4e-05 RING/U-box superfamily protein (.1) AT4G22250 46 / 5e-05 RING/U-box superfamily protein (.1) AT4G09250 45 / 0.0002 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) AT4G09310 45 / 0.0002 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) AT4G09200 45 / 0.0002 SPla/RYanodine receptor (SPRY) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035857 [exp] 2019 / 0 AT2G22010 1667 / 0.0 related to KPC1 (.1.2) Lus10009451 [exp] 52 / 2e-06 AT1G35470 601 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10009316 [exp] 49 / 2e-05 AT1G35470 197 / 7e-59 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10020190 [exp] 48 / 2e-05 AT1G35470 167 / 1e-48 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G083800 [exp] 1532 / 0 AT2G22010 1726 / 0.0 related to KPC1 (.1.2) Potri.007G081900 [exp] 1510 / 0 AT2G22010 1712 / 0.0 related to KPC1 (.1.2) Potri.004G003101 [exp] 49 / 8e-06 AT4G03965 135 / 3e-39 RING/U-box superfamily protein (.1) Potri.013G108400 [exp] 47 / 5e-05 AT1G35470 607 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Potri.002G224200 [exp] 45 / 6e-05 AT4G03965 116 / 7e-33 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00622 [flax] [poplar] SPRY SPRY domain
Representative CDS sequence Show only first row Show all	>Lus10016817 pacid=23149156 polypeptide=Lus10016817 locus=Lus10016817.g ID=Lus10016817.BGIv1.0 annot-version=v1.0 ATGGCAGAAGATAGCATGCGAAGTGGTGGGCTATCTTCTGGGTTGGCTGTAGTATTGAAGGGAGAGGAGGAAAAGGACAGTTCCTCTAAAAGCCGACTTG TTTCGTGTTTTGATGATTTTGGTGATCAGACTGTCGAACGTGCTCTGGAGTATATTTTTGCTTTTCCTCACAGATCTCTTGCTCCGGTTACTGGTCCAGT CAACATAGATCTAGTCTGCGCTTTGATAAAGAGTGAGATGGCTACATCTAGTCCAAATCCTTCTACTTTGAACAGTAAAAGGGAAGGAATTTGTATTGAG AATGCTAGTCGATCTCTGACGGTCGGACTTGAAGAATTAAGCATATGTGGTGACATTAGAATCATTAAGGCTCCTTTGCTTATTGAGAGCTTAGCAATGT TCAGCAGTATTAGGGCCAATGTGCGAGTTTGGAAAGGTAAATGGATGTATGAGGTTGTTTTAGAAACTTCTGGGGTACAACAGCTTGGATGGGCAACTCG ATCTTGTCCTTTTACTGACCATAAAGGTGTAGGTGATGCGGATGATTCATTTGCTTTTGATGGGAAAAGAGTTAGCAAGTGGAACAAAGATGCTGAGCCG TATGGTCAATCTTGGGTTGTTGGTGATGTAATTGGCTGTTGCATTGACATGGACCTTGATGAGATCCTATTCTACAGAAATGGTGCGTCTCTTGGTGTGG CATTCCATGGTATTCGTAAAATGGGACCTGGCTTTGGGTACTATCCAGCTATATCTCTTTCTCAAGGTGAGCGGTGTGAGTTGAACTTTGGAGCACGACC TTTTAAGTACCCCATTAAGGGTTTTCTTCCTCTCCAAGCCCCCCCATCTGCTAATCATTTTGCTTCACAAATGCTTAGCTGCTTGTCGAGGCTGTTGGAC CTGCAATCCAGGGAGCAAGCTGATAGTTTTTTGGCTGCCAAATTTAGAAGATTGAAGAGGTTCGTCTCACTTGAGGAATTGTATTCTCCTGTTTCTCGTG GAATATGCGAGGTAATGTTCTCTGTACTTGGGACAGAAGCCGAAAGCTTGGAGTACATAGCTTGGGGTTCGTTTCTTACGTTCATGGTGGAGGTATTTAG GACCCAAGCACCCCATGAATATGTGGGGTTGGATAAAATCATTAATGTCTTTCTGGAATTTCATGAGTCGCATTTGGTGTTTGAGCATCTTGTTAATGCA CTTTCAAGTGCCTGCAAAACAGCTCCATTAAGATTGACCGACTGTCCATACTCAGGATCTTATCCTTATCTTGCCCTGGCATGTCATATTTTGAAGCGGC AAGAACTAATGGTACTCTGGTGGAAATCATCAGATTTCGAATCATTATTTGAAGGATTTTTATCCCAAAAGAATCTGAACAAACAGGATCTGCAGTGTCT GATGCCTTCTGTTTGGTGGCCTGGTTCATATGAGGATGCTGCTTATGAAGGTAGCATGACTTTGACAACAACAGCATTATCTGAAGCAATCAGTAAGATT GAAGAGAAGCATCGGGAGCTTTGTCTCTTGGTTATTCAATTTCTACCACCGACATTGCCGCCTCAGTTTCCTGGTTCAGTGTTTAGGACTTTTCTACAGA ATCTTCTATTGAAGAACCGGGGAGCAGAACGCAATGTGCCACCTCCTGGAGTTTCCGGCAACTCTGTGCTTGTTTCTTTGTACACTGTCATACTACACTT TCTATCGGAAGGATTTGCTATGAGGGATGTAGGTGGAACAAATGGACATGACCTTGGATTTCTTCATAGAGGTGGAGAGCAGAGTTTTCCAGTTGAACTC TTCTTGAAGAATGATTCTCATCGAACTGACATCTCTAGGCTTGGAGGATCTTTTAGTCACTTGTCAAAATCTCATCCTATAAGTGACCAAGAAGATGAAG TAATCCGGTGGGATGAAGGCTGTGTGGATGATGAAGAAACTAGAGTAACACATAATACGACTCAGAAACCATGTTGTTGCTCATGTTACGAAGTTGAATT TGCAAGATCTTCGAAGAATTTGGTCAGATATGCGCCTAGAGGTTCTCGTGTCCATTGTAGCCCAATTGGGGAAAGGTCTGCTCAGTCGGCAGAATGCAGT GCTGGAAGTTTGAGTGACGAGATAGTGGACAAACCTAGTACGAGCGATCAGTCTGAGGCTGACTTTGGTTATTGTCCATTGTGGAATTTAAGGATAATGC CAAGAGAAAGTAACGTTTCTTGCGCTACCCTTAGAGAAGAGGAGCTTCTAGATGCTTTGATTTTGTTGTATCAGATAGGTGTTGCCCCAAATTTTAAGCA GGCATCATATTTCGTGTCTCATCAGTCGCAATCAGTAGCCCTCCTTGAAGAAACTGAAAGACAAATAAGGGAGCGACCTAGCAGTGAACAACTAAGGCGA TTGAAGGAAGCCCGTAATGATTATCGAGAAGAAGTAGTTGATTATGTCAGACATTCCACATGGTATCGGATTTCTCTTTTCACCCGATGGAAGCAAAGAG GGATGTATGCAGTATGTATGTGGATAGTCCAACTACTTCTGGTTCTCAGCAAAGTTGATTCCTTATTTCTCTATGTCCCAGAATATTATCTTGAGACAAT AGTGGACTGCTTTCATGTGCTGCGGAAGAGTGATCCTCCGTTTGTCCCTTCAGCAATATTCATCAGACAAGGCCTTGCTCCATTTGTCACATTTGTGGTT AGCCACTTCAACGACCCAAGAATACTGAGTGCAGATCTCAGGGATCTTCTTCTTCAGTCAATATCAGTGCTTGTACAGTACAAGGAATATGTGGCAACAT TTGAGAGCAATAGGGCAGCCACACAAACATTGCCAAGATCCTTGTTGACTGCTTTTGATAACAGATGTTGGATCCCTGTAACAAACATTCTTTTGCGGTT GTGCAAAGGTTCTTTGTTTGGATCTTTGAAGCATGGGGAATCATCTTCGTCTTCAGTGGTCTTCCAGACATTGCTGAGAGAAACTTGCATCAGTGATCAG GAGTTGTTCTCAGGTTTCCTTAATAGACTCTTTAATACTCTAAGCTGGACGATGACTGAGTTCTCAGTTTCTGTTCGGGAAATGCAAGAAAAATACCAGG CTGGCTCTGGGCGGGGAGAGTCTTACGTTGGGAAGTTGTGCCAGCTTGAGAATTTCTTGGGCCTTCTTATAAGCCGGACCGAATCAGATGAAGTTGAGCG GTCTCATCGAATAGGGGAAGCAAACAATGATGACACCACCTGCTGTATTTGTTACACCAGTGAAGCTGATGCACAGTTTGGTCCTTGCTTGCATCGCTCT TGCTATGGTTGCATAACCAGACACCTACTCAACTCCCACAGATGTTTCTTCTGCAACGCCACGGTCCTCGAGGTGGTCAACATCACCGAAAGCAGTGAAG TCGATACTCATTCTCTTGCCTAA
AA sequence Show only first row Show all	>Lus10016817 pacid=23149156 polypeptide=Lus10016817 locus=Lus10016817.g ID=Lus10016817.BGIv1.0 annot-version=v1.0 MAEDSMRSGGLSSGLAVVLKGEEEKDSSSKSRLVSCFDDFGDQTVERALEYIFAFPHRSLAPVTGPVNIDLVCALIKSEMATSSPNPSTLNSKREGICIE NASRSLTVGLEELSICGDIRIIKAPLLIESLAMFSSIRANVRVWKGKWMYEVVLETSGVQQLGWATRSCPFTDHKGVGDADDSFAFDGKRVSKWNKDAEP YGQSWVVGDVIGCCIDMDLDEILFYRNGASLGVAFHGIRKMGPGFGYYPAISLSQGERCELNFGARPFKYPIKGFLPLQAPPSANHFASQMLSCLSRLLD LQSREQADSFLAAKFRRLKRFVSLEELYSPVSRGICEVMFSVLGTEAESLEYIAWGSFLTFMVEVFRTQAPHEYVGLDKIINVFLEFHESHLVFEHLVNA LSSACKTAPLRLTDCPYSGSYPYLALACHILKRQELMVLWWKSSDFESLFEGFLSQKNLNKQDLQCLMPSVWWPGSYEDAAYEGSMTLTTTALSEAISKI EEKHRELCLLVIQFLPPTLPPQFPGSVFRTFLQNLLLKNRGAERNVPPPGVSGNSVLVSLYTVILHFLSEGFAMRDVGGTNGHDLGFLHRGGEQSFPVEL FLKNDSHRTDISRLGGSFSHLSKSHPISDQEDEVIRWDEGCVDDEETRVTHNTTQKPCCCSCYEVEFARSSKNLVRYAPRGSRVHCSPIGERSAQSAECS AGSLSDEIVDKPSTSDQSEADFGYCPLWNLRIMPRESNVSCATLREEELLDALILLYQIGVAPNFKQASYFVSHQSQSVALLEETERQIRERPSSEQLRR LKEARNDYREEVVDYVRHSTWYRISLFTRWKQRGMYAVCMWIVQLLLVLSKVDSLFLYVPEYYLETIVDCFHVLRKSDPPFVPSAIFIRQGLAPFVTFVV SHFNDPRILSADLRDLLLQSISVLVQYKEYVATFESNRAATQTLPRSLLTAFDNRCWIPVTNILLRLCKGSLFGSLKHGESSSSSVVFQTLLRETCISDQ ELFSGFLNRLFNTLSWTMTEFSVSVREMQEKYQAGSGRGESYVGKLCQLENFLGLLISRTESDEVERSHRIGEANNDDTTCCICYTSEADAQFGPCLHRS CYGCITRHLLNSHRCFFCNATVLEVVNITESSEVDTHSLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22010		RKP	related to KPC1 (.1.2)		Lus10016817 [exp]	0	1
AT5G42940			RING/U-box superfamily protein...		Lus10010036 [exp]	1.0	0.9322
AT3G12010			unknown protein		Lus10017227 [exp]	1.7	0.8991
AT3G52250	MYB		Duplicated homeodomain-like su...		Lus10036515 [exp]	3.2	0.9021
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10039926 [exp]	3.6	0.8787
AT4G29900		CIF1, ATACA10, ...	COMPACT INFLORESCENCE 1, autoi...		Lus10001428 [exp]	7.3	0.8911
AT1G08420		BSL2	BRI1 suppressor 1 (BSU1)-like ...		Lus10013357 [exp]	9.2	0.8763
AT5G44180	HD		Homeodomain-like transcription...		Lus10018634 [exp]	9.5	0.8771
AT3G02890			RING/FYVE/PHD zinc finger supe...		Lus10020350 [exp]	9.8	0.8796
AT1G73080		ATPEPR1, PEPR1	PEP1 receptor 1 (.1)		Lus10008849 [exp]	10.9	0.8473
AT4G18490			unknown protein		Lus10034597 [exp]	11.0	0.8468

Compare expression of checked genes

Lus10016817 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.