Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64930 256 / 1e-77 HYS1, CPR5 HYPERSENESCENCE 1, CONSTITUTIVE EXPRESSION OF PR GENES 5, CPR5 protein, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035856 [exp] 827 / 0 AT5G64930 342 / 2e-111 HYPERSENESCENCE 1, CONSTITUTIVE EXPRESSION OF PR GENES 5, CPR5 protein, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G082100 [exp] 405 / 3e-135 AT5G64930 252 / 2e-76 HYPERSENESCENCE 1, CONSTITUTIVE EXPRESSION OF PR GENES 5, CPR5 protein, putative (.1) Potri.005G083600 [exp] 404 / 6e-135 AT5G64930 273 / 3e-84 HYPERSENESCENCE 1, CONSTITUTIVE EXPRESSION OF PR GENES 5, CPR5 protein, putative (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016818 pacid=23149039 polypeptide=Lus10016818 locus=Lus10016818.g ID=Lus10016818.BGIv1.0 annot-version=v1.0 ATGAGCCGTCGTCTTAAATGTCATCTACCCCTCCCTCCTCCAACCGCCCACCATCCGCCTCCGGCTATGGGCACCCATTCGTCCGCCGCGAACGGCCCCT ATCCGGCGGACCAAACCGCTCCTTCGCCAGATCCATTCGAGAACGGTCATCCAATTCGGACCCAGATGAAGAAAAAAACCAAAACTGTAAAGAAGAAGAA AATCTCGATAGACGACGCTTCTTCTTCGTCCTCTGCCTCCTCTTCTTTTAGCTCTTTCCAGAGGAATCCACGTACACACCTTCTACGGAAGGTGGTGATT GCTCCCTTACACCGCCGTGTCGGTGATGCTGCTATAACTGGCGAGAACTTGGACGCCATTGCTCTCCCTCTCGGCATGTCCTTTGCCGCAGTCATTACAC AGGTTTTGGAGAAGAAAGATGTTCAGAGCGAAAGGATGTCCGCGGAGCTTCTATCAACGATTTGTACAACTGCTGTCAGAGAATCTTTAGCGAATGTTTT TGGTCATAAATTTGAATTATTTGCTAGTAACTTCCAAAGATCATTCCAAAGCACCTTAAGGACTCTTCGAGTGATTAATGAATCACCTTTCCGTAGAGGT TCTCTTGATTCAGGCCACCTGAATCCAGATAAGTTTGGTCCTGATGTAGTTTCCAACAAACCAATTGCTGGTTCTACAAGCTGCTCTAGTACCAGAAATT TTTATGACGAATCAGACTTGTCGTTCAGTTTAGTCCACAATCGGTTGCATTCAACTGAAGAAATTGAAGGGGATCTCTCTACAGTTTGTTTGACCCGGGA ACTTACCGTTCATGGCCAGATGAACCAACTGACATGTTCTCCTAGCTCATTAGGTTCAAGGATTGTCGCAGAGCAAGCCCGTTCTAATGACCTCAAAGAA TTGGAGATTGGTCTGTCCATGAGAAGACTCAAATTGGAAATGGAACAAATAGCTCTTAGTGAGGATTCCAATCGTCTAAAGGAGTCTAAATTGACAATGG GTAAAGAAAAGGCTTCTTTTAAAGCTGAAAAGTTCAAGACTCAACAAGAAGACACCAAACATGCTGAGCTGCTTCAGAAATGCATAGACTGCCTTGTGGC TGGTTTGTTCATCATGTCAGCCTCCCTCTGTTATAGTGCATATGTCTATTCCCATAGAAGGATTACAGAAGCTACTCAGATTTGTGCTGAGCCTTTTGAG GAAAGCAAATCGTGGTGGATGCCGAAATCAGTCTCCTCTTTGAATTCTGGGCTGCACACTCTGAGGTGTCGAGTTGAAGTTGTGAGCAGGATGGTATTTG GGTTACTAATGATTCTTGCAGTTGCTTATCTGCTTCTGCAGCGTTCAGCGACTGCACATCAAAGGATGATGCCAGTGACTACCATCTTATTGATACTGGG ATTTGCATGTGGGTTTGCTGGGAAACTGTGTGTGGATACGTTAGGAGGGGATGGATTCCTTTGGCTTTTGTTATGGGAATCTATATGCTTGCTGCACTTC CTAACCAATGTGTTCGCATCAACTGTGTTCCACATACTTTGCGGGTCACTAGACATCTCCCAATGTCACAGCAGGACGCCAATATGTCCGTACTGGGTTC GAAGGTCTATTTTCTACACAATCACACTCGTGGTCTTACCGTTATGCTGTGGACTACTGCCTTTTGCTGGTGTTAGGGAATGGACGGACCATTTCTACAT GCTTGCTATGGTCGAGAGCATCTGA
AA sequence Show only first row Show all	>Lus10016818 pacid=23149039 polypeptide=Lus10016818 locus=Lus10016818.g ID=Lus10016818.BGIv1.0 annot-version=v1.0 MSRRLKCHLPLPPPTAHHPPPAMGTHSSAANGPYPADQTAPSPDPFENGHPIRTQMKKKTKTVKKKKISIDDASSSSSASSSFSSFQRNPRTHLLRKVVI APLHRRVGDAAITGENLDAIALPLGMSFAAVITQVLEKKDVQSERMSAELLSTICTTAVRESLANVFGHKFELFASNFQRSFQSTLRTLRVINESPFRRG SLDSGHLNPDKFGPDVVSNKPIAGSTSCSSTRNFYDESDLSFSLVHNRLHSTEEIEGDLSTVCLTRELTVHGQMNQLTCSPSSLGSRIVAEQARSNDLKE LEIGLSMRRLKLEMEQIALSEDSNRLKESKLTMGKEKASFKAEKFKTQQEDTKHAELLQKCIDCLVAGLFIMSASLCYSAYVYSHRRITEATQICAEPFE ESKSWWMPKSVSSLNSGLHTLRCRVEVVSRMVFGLLMILAVAYLLLQRSATAHQRMMPVTTILLILGFACGFAGKLCVDTLGGDGFLWLLLWESICLLHF LTNVFASTVFHILCGSLDISQCHSRTPICPYWVRRSIFYTITLVVLPLCCGLLPFAGVREWTDHFYMLAMVESI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64930		HYS1, CPR5	HYPERSENESCENCE 1, CONSTITUTIV...		Lus10016818 [exp]	0	1
AT5G17440			LUC7 related protein (.1)		Lus10026846 [exp]	6.5	0.7722
AT5G22480			ZPR1 zinc-finger domain protei...		Lus10015454 [exp]	13.5	0.7162
AT4G29490			Metallopeptidase M24 family pr...		Lus10032694 [exp]	15.9	0.7707
AT1G79490		EMB2217	embryo defective 2217, Pentatr...		Lus10037517 [exp]	21.7	0.7691
AT5G06810			Mitochondrial transcription te...		Lus10012021 [exp]	23.1	0.7331
					Lus10043073 [exp]	27.5	0.7510
AT3G14820			GDSL-like Lipase/Acylhydrolase...		Lus10014257 [exp]	27.9	0.6895
AT5G08560			transducin family protein / WD...		Lus10001410 [exp]	30.5	0.7373
AT2G19490			recA DNA recombination family ...		Lus10021585 [exp]	33.6	0.7347
AT5G11470			bromo-adjacent homology (BAH) ...		Lus10037903 [exp]	37.6	0.7585

Compare expression of checked genes

Lus10016818 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.