Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016821 [exp] 161 / 5e-52 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G218622 [exp] 39 / 0.0004 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016819 pacid=23179041 polypeptide=Lus10016819 locus=Lus10016819.g ID=Lus10016819.BGIv1.0 annot-version=v1.0 ATGGCACCTCCTCAAGCAAACAAATTCATGAGGATTGCTGAAGAAGGCTTTTCCCTCATCGACAACGGCTACTACGGCGGCCCCAGCGGAGGCTATTATT CTTCAGCAGTCCACCGCCGTAGTAGTAGTACTGCTCATCATTATGCGGCCCAATACCAAACCGACCAATATCAGACCGAACAGAAGCAGTCGTTCATCTA TTACTGTCCTCGTATGTCGACCACCACGGTAAGGATTCCGGCGGCGAAGGAGGGGATTCGTAATTACCAGAGCAGCCGAGTGCCGGCGGCGGCAAGGATG GCGGAGCGGGTGATGACGAGTGACGAGGCGGCCCAGAAGTTTGGTGGGTTTGTCGTTGTGGACCACGGTTCAAGAAGGCGTTCTTCTAAGTGGGGCTTTT GA
AA sequence Show only first row Show all	>Lus10016819 pacid=23179041 polypeptide=Lus10016819 locus=Lus10016819.g ID=Lus10016819.BGIv1.0 annot-version=v1.0 MAPPQANKFMRIAEEGFSLIDNGYYGGPSGGYYSSAVHRRSSSTAHHYAAQYQTDQYQTEQKQSFIYYCPRMSTTTVRIPAAKEGIRNYQSSRVPAAARM AERVMTSDEAAQKFGGFVVVDHGSRRRSSKWGF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10016819 [exp]	0	1
AT5G59190			subtilase family protein (.1)		Lus10004682 [exp]	4.7	0.8398
AT1G07250		UGT71C4	UDP-glucosyl transferase 71C4 ...		Lus10010476 [exp]	8.1	0.8125
AT2G44450		BGLU15	beta glucosidase 15 (.1)		Lus10031235 [exp]	11.8	0.8614
AT4G05230			Ubiquitin-like superfamily pro...		Lus10007641 [exp]	15.1	0.8366
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Lus10042210 [exp]	19.8	0.8173
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10033581 [exp]	20.4	0.8258
AT3G50845			Protein of unknown function (D...		Lus10014311 [exp]	23.4	0.8210
AT3G02645			Plant protein of unknown funct...		Lus10033668 [exp]	25.0	0.7550
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015746 [exp]	25.3	0.8142
					Lus10025503 [exp]	25.7	0.8108

Compare expression of checked genes

Lus10016819 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.