Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016819 [exp] 144 / 2e-45 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G218622 [exp] 39 / 0.0004 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016821 pacid=23179056 polypeptide=Lus10016821 locus=Lus10016821.g ID=Lus10016821.BGIv1.0 annot-version=v1.0 ATGGAACCACCTCAAGCAAACAAATTCATGGGGATTGCTGAAGATGGCTTTTCCCTCATCGAAAACGGATACTACGGCGGTGGCAGCGGTGGAGGCTATT CTTCTTCGGCGGCAGTCCATCGCCGTAGTAGTAGTACTGCGCATCATTATGCGGCCCAGTACCAAACCTACCAATATCAGACCGAACAGCAGCAGCCGTT CATCTATTACTGTCCTCGTATGTCGACCACCACGGTAAAGGTTCCGGCGGCGACGGAGGGGATTCGGTATTACCAGAGCAGCCGAGTGCCGGCGGCGGAG CGGGTGATGACGAGCGACGAGGCGGCCCAGAAGTTCGGTGGGTTTGTCGTTGTGGATCACGGTGCTAAAAGGCGGTCTTCTAAGTGGGGCTTTTGA
AA sequence Show only first row Show all	>Lus10016821 pacid=23179056 polypeptide=Lus10016821 locus=Lus10016821.g ID=Lus10016821.BGIv1.0 annot-version=v1.0 MEPPQANKFMGIAEDGFSLIENGYYGGGSGGGYSSSAAVHRRSSSTAHHYAAQYQTYQYQTEQQQPFIYYCPRMSTTTVKVPAATEGIRYYQSSRVPAAE RVMTSDEAAQKFGGFVVVDHGAKRRSSKWGF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10016821 [exp]	0	1
AT5G01750			Protein of unknown function (D...		Lus10009093 [exp]	1.4	0.8917
					Lus10033211 [exp]	2.8	0.8652
AT1G30590			RNA polymerase I specific tran...		Lus10018154 [exp]	4.0	0.8780
					Lus10036407 [exp]	5.6	0.8189
AT3G05327			Cyclin family protein (.1)		Lus10004475 [exp]	8.7	0.8250
AT5G22390			Protein of unknown function (D...		Lus10004863 [exp]	17.1	0.8601
					Lus10019472 [exp]	17.1	0.8726
					Lus10031014 [exp]	19.6	0.8539
AT3G48200			unknown protein		Lus10002461 [exp]	19.9	0.8513
AT1G27180			disease resistance protein (TI...		Lus10018309 [exp]	22.0	0.8337

Compare expression of checked genes

Lus10016821 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.