Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78400 93 / 2e-22 Pectin lyase-like superfamily protein (.1) AT1G43080 85 / 1e-19 Pectin lyase-like superfamily protein (.1) AT2G15460 85 / 1e-19 Pectin lyase-like superfamily protein (.1) AT2G15450 85 / 1e-19 Pectin lyase-like superfamily protein (.1) AT1G43090 85 / 2e-19 Pectin lyase-like superfamily protein (.1) AT3G07970 85 / 2e-19 QRT2 QUARTET 2, Pectin lyase-like superfamily protein (.1) AT2G26620 84 / 2e-19 Pectin lyase-like superfamily protein (.1) AT2G33160 82 / 1e-18 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (.1) AT2G40310 82 / 2e-18 Pectin lyase-like superfamily protein (.1) AT1G43100 82 / 2e-18 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012489 [exp] 94 / 1e-22 AT1G02790 307 / 6e-101 polygalacturonase 4 (.1) Lus10003782 [exp] 91 / 2e-21 AT1G02790 323 / 4e-107 polygalacturonase 4 (.1) Lus10002931 [exp] 81 / 4e-18 AT3G07820 233 / 6e-73 Pectin lyase-like superfamily protein (.1) Lus10002125 [exp] 80 / 1e-17 AT3G59850 509 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011418 [exp] 79 / 3e-17 AT2G43870 499 / 2e-177 Pectin lyase-like superfamily protein (.1) Lus10043088 [exp] 76 / 2e-16 AT3G07820 360 / 6e-123 Pectin lyase-like superfamily protein (.1) Lus10011419 [exp] 76 / 2e-16 AT2G43870 507 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10013783 [exp] 72 / 4e-16 AT3G07820 85 / 1e-19 Pectin lyase-like superfamily protein (.1) Lus10026183 [exp] 74 / 7e-16 AT2G33160 305 / 2e-100 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G007300 [exp] 152 / 1e-44 AT4G18180 289 / 2e-94 Pectin lyase-like superfamily protein (.1) Potri.010G011100 [exp] 149 / 1e-43 AT1G02790 295 / 1e-96 polygalacturonase 4 (.1) Potri.010G011200 [exp] 139 / 1e-39 AT1G02790 300 / 1e-98 polygalacturonase 4 (.1) Potri.002G202200 [exp] 100 / 2e-25 AT1G02790 400 / 7e-138 polygalacturonase 4 (.1) Potri.002G202100 [exp] 100 / 2e-25 AT1G02790 399 / 2e-137 polygalacturonase 4 (.1) Potri.009G038100 [exp] 86 / 5e-20 AT1G78400 357 / 4e-121 Pectin lyase-like superfamily protein (.1) Potri.009G169100 [exp] 79 / 2e-17 AT4G18180 563 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.010G177601 [exp] 75 / 6e-16 AT1G65570 491 / 3e-174 Pectin lyase-like superfamily protein (.1) Potri.007G144100 [exp] 73 / 2e-15 AT2G43870 525 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.010G177501 [exp] 72 / 4e-15 AT1G65570 491 / 3e-174 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10016822 pacid=23179122 polypeptide=Lus10016822 locus=Lus10016822.g ID=Lus10016822.BGIv1.0 annot-version=v1.0 ATGGCGGGAACGTTGGAGATTACTCAGGCGACCACCACCTCCGCCCTTCTTTTATTCGTCATTCTCGCCGCCGTTTGTTCTTCCGTGCAGCCACAGCCAC ATCACCCCCACCACCATAGCCATAGGGATCCCAACGAGAAGGTCTTCAACATCCTTCACTTTGGCGCCAAGCCCGGCGCCAAGCACGATGCTTCCTTGAA CATAATGAAGGCGTTCAGGGCGGCGTGTCTGACGCCGGGAAGTGTGAGGTTGGTAATACCGGCGGGGGAGTTTTTGGCCGGAATGATGGTGTTCTCAGGG CCATGCAAAGCAAGACATATTATGTTTCAGGTTGTGGGGAACTTGAAAGCAGTCGACGACCCGTCGGTTTACCCGGAGGATTTCTGGATGTCGTTTGAAG GTGTTGACGGACTCATCGTTTGCGGCAGAGGTACCGTTGACGGTCAAGGGCAGAAGATGTGGCCGTTTAACGACGGCGGTGGCTCTTCTTTCCCCGCTTT TCTTCCCCCGCCGTTTTTTCATGAACCGAGTTGA
AA sequence Show only first row Show all	>Lus10016822 pacid=23179122 polypeptide=Lus10016822 locus=Lus10016822.g ID=Lus10016822.BGIv1.0 annot-version=v1.0 MAGTLEITQATTTSALLLFVILAAVCSSVQPQPHHPHHHSHRDPNEKVFNILHFGAKPGAKHDASLNIMKAFRAACLTPGSVRLVIPAGEFLAGMMVFSG PCKARHIMFQVVGNLKAVDDPSVYPEDFWMSFEGVDGLIVCGRGTVDGQGQKMWPFNDGGGSSFPAFLPPPFFHEPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78400			Pectin lyase-like superfamily ...		Lus10016822 [exp]	0	1

Compare expression of checked genes

Lus10016822 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.