Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02790 239 / 5e-77 PGA4 polygalacturonase 4 (.1) AT4G18180 226 / 2e-72 Pectin lyase-like superfamily protein (.1) AT3G14040 212 / 2e-66 Pectin lyase-like superfamily protein (.1) AT3G07850 211 / 3e-66 Pectin lyase-like superfamily protein (.1) AT3G07820 207 / 4e-65 Pectin lyase-like superfamily protein (.1) AT3G07840 205 / 4e-64 Pectin lyase-like superfamily protein (.1) AT3G07830 197 / 3e-61 Pectin lyase-like superfamily protein (.1) AT3G59850 195 / 2e-60 Pectin lyase-like superfamily protein (.1) AT5G48140 195 / 2e-60 Pectin lyase-like superfamily protein (.1) AT1G65570 192 / 3e-59 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003782 [exp] 223 / 1e-70 AT1G02790 323 / 4e-107 polygalacturonase 4 (.1) Lus10012489 [exp] 216 / 4e-68 AT1G02790 307 / 6e-101 polygalacturonase 4 (.1) Lus10041059 [exp] 209 / 2e-65 AT3G07830 310 / 1e-102 Pectin lyase-like superfamily protein (.1) Lus10041058 [exp] 209 / 4e-65 AT3G07830 311 / 1e-102 Pectin lyase-like superfamily protein (.1) Lus10009606 [exp] 204 / 9e-64 AT3G07840 323 / 4e-108 Pectin lyase-like superfamily protein (.1) Lus10016824 [exp] 204 / 2e-63 AT4G18180 281 / 7e-91 Pectin lyase-like superfamily protein (.1) Lus10009605 [exp] 203 / 1e-61 AT3G07840 317 / 1e-102 Pectin lyase-like superfamily protein (.1) Lus10043088 [exp] 197 / 1e-61 AT3G07820 360 / 6e-123 Pectin lyase-like superfamily protein (.1) Lus10011418 [exp] 198 / 2e-61 AT2G43870 499 / 2e-177 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G007300 [exp] 320 / 6e-109 AT4G18180 289 / 2e-94 Pectin lyase-like superfamily protein (.1) Potri.010G011100 [exp] 312 / 4e-106 AT1G02790 295 / 1e-96 polygalacturonase 4 (.1) Potri.010G011200 [exp] 306 / 2e-103 AT1G02790 300 / 1e-98 polygalacturonase 4 (.1) Potri.002G202100 [exp] 253 / 1e-82 AT1G02790 399 / 2e-137 polygalacturonase 4 (.1) Potri.002G202200 [exp] 253 / 1e-82 AT1G02790 400 / 7e-138 polygalacturonase 4 (.1) Potri.009G169100 [exp] 233 / 1e-74 AT4G18180 563 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.009G038100 [exp] 216 / 9e-69 AT1G78400 357 / 4e-121 Pectin lyase-like superfamily protein (.1) Potri.014G162300 [exp] 205 / 6e-65 AT3G07850 358 / 3e-122 Pectin lyase-like superfamily protein (.1) Potri.019G067133 [exp] 205 / 3e-64 AT3G07820 400 / 3e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067200 [exp] 205 / 3e-64 AT3G07820 400 / 3e-138 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10016823 pacid=23179033 polypeptide=Lus10016823 locus=Lus10016823.g ID=Lus10016823.BGIv1.0 annot-version=v1.0 ATGAAGTTCATGAAGGTGAAGAACACGATCATAAAGCAGATAACATCGGTAAACCCGATGGGATTCCACATCGGAATCGTGCTCTCCCACAACGTACGAG CCAAACACGTCCACCTCATCGCTCCAGAGGACAGCCCGAACACGGATGGGTTCCACATCAGCCAGTCGAGCCTCGTGAGAGTGACACGGAGCACCATCGA GACAGGGGACGACTGCGTGGGGATCATCCATGGTTGCACCGATGTGGCGATCAAGAAGGTGTTCTGTGGGCCAGGGCACGGCATCAGCATCGGCAGCTTG GGGAAGTACTCGGACGAGAAGGACGTCGTAGGTGTGACGGTGAAGAACTGCACGCTGAGGAAGACCGATAACGGAGTTAGGATCAAGACCTACGCTGGGT CCCCTCCTAGCCAGGCTTCAAGGATGGTGTTTGAAGATATTGTGATGGAGGATGTTAAGCATCCCATCATTATTGATCAGCACTATGGCTCCAGCTCCAA AGGGCCGTCGCAGGTGAAGATCAGCGACATCCAGTTCAATAACATAAGGGGGACCACCATCTCAGACGTCGGGATTTTGCTCGATTGCAGCGAGAAGGTG CCCTGCGAAGGAGTTCGATTCTCCAACGTTGATCTCAAGTACAGTGGAACAAGCAAGACCAAGCCTTTCGTGACTAGTTGTGCCAATGCTAAGGCCAGCT TCAATGGCCTCAAATCCCCACCTCCTTGCCACGCTTAA
AA sequence Show only first row Show all	>Lus10016823 pacid=23179033 polypeptide=Lus10016823 locus=Lus10016823.g ID=Lus10016823.BGIv1.0 annot-version=v1.0 MKFMKVKNTIIKQITSVNPMGFHIGIVLSHNVRAKHVHLIAPEDSPNTDGFHISQSSLVRVTRSTIETGDDCVGIIHGCTDVAIKKVFCGPGHGISIGSL GKYSDEKDVVGVTVKNCTLRKTDNGVRIKTYAGSPPSQASRMVFEDIVMEDVKHPIIIDQHYGSSSKGPSQVKISDIQFNNIRGTTISDVGILLDCSEKV PCEGVRFSNVDLKYSGTSKTKPFVTSCANAKASFNGLKSPPPCHA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02790		PGA4	polygalacturonase 4 (.1)		Lus10016823 [exp]	0	1
AT1G09380			nodulin MtN21 /EamA-like trans...		Lus10031437 [exp]	10.7	0.6432
					Lus10032997 [exp]	32.6	0.6161
					Lus10004795 [exp]	33.0	0.5506
					Lus10026392 [exp]	34.6	0.6209
AT4G33355			Bifunctional inhibitor/lipid-t...		Lus10029445 [exp]	68.1	0.5540
AT1G26140			unknown protein		Lus10034406 [exp]	110.4	0.5468
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10024367 [exp]	155.5	0.5024
AT4G14103			F-box/RNI-like superfamily pro...		Lus10020635 [exp]	168.9	0.5151
					Lus10029048 [exp]	186.0	0.4759
AT5G58610			PHD finger transcription facto...		Lus10015250 [exp]	188.3	0.5051

Compare expression of checked genes

Lus10016823 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.