Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18180 280 / 3e-90 Pectin lyase-like superfamily protein (.1) AT3G14040 276 / 3e-88 Pectin lyase-like superfamily protein (.1) AT3G07850 269 / 1e-85 Pectin lyase-like superfamily protein (.1) AT1G43080 263 / 5e-84 Pectin lyase-like superfamily protein (.1) AT1G43090 264 / 1e-83 Pectin lyase-like superfamily protein (.1) AT3G07840 262 / 1e-83 Pectin lyase-like superfamily protein (.1) AT1G02790 261 / 1e-82 PGA4 polygalacturonase 4 (.1) AT2G40310 259 / 2e-82 Pectin lyase-like superfamily protein (.1) AT2G15460 258 / 4e-82 Pectin lyase-like superfamily protein (.1) AT1G43100 259 / 5e-82 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011418 [exp] 253 / 3e-80 AT2G43870 499 / 2e-177 Pectin lyase-like superfamily protein (.1) Lus10002125 [exp] 251 / 4e-79 AT3G59850 509 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10002124 [exp] 249 / 2e-78 AT2G43870 505 / 7e-180 Pectin lyase-like superfamily protein (.1) Lus10002123 [exp] 249 / 2e-78 AT2G43870 498 / 5e-177 Pectin lyase-like superfamily protein (.1) Lus10011419 [exp] 248 / 3e-78 AT2G43870 507 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10003001 [exp] 249 / 2e-75 AT3G07840 362 / 1e-118 Pectin lyase-like superfamily protein (.1) Lus10009606 [exp] 240 / 6e-75 AT3G07840 323 / 4e-108 Pectin lyase-like superfamily protein (.1) Lus10041059 [exp] 239 / 5e-74 AT3G07830 310 / 1e-102 Pectin lyase-like superfamily protein (.1) Lus10041058 [exp] 239 / 5e-74 AT3G07830 311 / 1e-102 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G169100 [exp] 310 / 7e-102 AT4G18180 563 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.002G202100 [exp] 275 / 1e-88 AT1G02790 399 / 2e-137 polygalacturonase 4 (.1) Potri.010G011200 [exp] 275 / 3e-88 AT1G02790 300 / 1e-98 polygalacturonase 4 (.1) Potri.002G202200 [exp] 275 / 3e-88 AT1G02790 400 / 7e-138 polygalacturonase 4 (.1) Potri.007G035800 [exp] 270 / 1e-86 AT3G07820 350 / 7e-119 Pectin lyase-like superfamily protein (.1) Potri.019G067050 [exp] 266 / 3e-85 AT3G07820 399 / 5e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067000 [exp] 266 / 3e-85 AT3G07820 399 / 5e-138 Pectin lyase-like superfamily protein (.1) Potri.019G066800 [exp] 266 / 3e-85 AT3G07820 399 / 5e-138 Pectin lyase-like superfamily protein (.1) Potri.010G007300 [exp] 261 / 3e-83 AT4G18180 289 / 2e-94 Pectin lyase-like superfamily protein (.1) Potri.019G067133 [exp] 261 / 3e-83 AT3G07820 400 / 3e-138 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10016824 pacid=23179109 polypeptide=Lus10016824 locus=Lus10016824.g ID=Lus10016824.BGIv1.0 annot-version=v1.0 ATGACATGTACTAACTATGCAACAGTTCATCACCTAATAATCTCTGCAGTCCTTGCAGTACTAGTTGCAGCATCAGCAGGATGTCCTTCTTCTTCTTATT CTACTTCTTCTGACCCTCTAATCTTTGCCCCATCACCTGAGTCGCCTGAATCACCAGAAACTTTACCAGAATCATTAGAAGAGTACTTTGATGTCACCGA ACATGGAGCAATTGCTGATGGGGAGACACAAAGTCAGACAGCGTTCTTATCAGCATGGGAAGCTGCTTGCAGTCACAATGGGAGTGGAGATTCGATGTTC TATGTCCCAGAAGGAATCTATTTTGTCGGACCAATGGTGTTCCAAGGTCCTTGCTTCAACGGCAAGAGTCCCAAGATACGGATCAGAGGGAGTTTAGTAG CTCCAACCAGCCTCTCTGCATTCAACAATTCCAACTGGATTCAGTTCAAGAATTTAAACGAGATTGATCTCACCGGAGCAAATGAACTATCGGAAATAGA TGGCAGGGGAGCAGTTGAAGCCTGGAAGCAAGACAGCTGCATCAAAGAATCAAGGTGTAAGCAAATCGTAACTTCTTTAAAGTTCAGTAATGTATCACAT GGAACCATAAGCAACATAACCCTCTCGAACGGGAAAGGATTCCACCTCGGTTTCTACTTCTGCAACAACATCAAAGTCGAGAACGTAGCGGTTTTGTCAC CGTGGGATAGCCCCAACACCGATGGAATCCACATTAGTCGTTCGGTTAACATAACCGTCGACTCCTCAACCATCGGAGTTGGCGATGACTGCGTATCGAT TGGACCCGGAAGTGTCAATGTCACCGTCTCCAATGTGCAATGTGGCCCTGGCCATGGAATCAGCATAGGGAGCCTTGGGAAGTACCCTGATGAAGAGGAT GTAATAGGAATCACTGTTTCGAACTGCACAATCAATGGTACTCAGAACGGGATTCGAGTCAAGACATGGCCAGGTTCGCCTGCGGGGAGTGCTTCGGGGA TAATCTTCCAGAACATTGTGATGATAAATGTCTCTAACCCTGTGATGATCGATCAGGAATATTGCCCGTCAAGAACCTGCAACATTACCAAGCCTTCGCT CGTGAAGCTGCGGGACATAGATGTGAGGAACGTGACGGGAACGTATAACAGTGAGGCACCGATGCCGCCGGTGAGTCTGCTCTGCAGTAGCCATGAGCCT TGCGAGAATATTAATCTGATCAATATAAACCTCCGACCAACTGAAGATGGAAATTCAAGACAGGGGCTTTTCCAGATCAAAGGGTTGTTTAATGGCCTCC ATGTTTTTCCTTCAGTTACTTCTCCACAATAG
AA sequence Show only first row Show all	>Lus10016824 pacid=23179109 polypeptide=Lus10016824 locus=Lus10016824.g ID=Lus10016824.BGIv1.0 annot-version=v1.0 MTCTNYATVHHLIISAVLAVLVAASAGCPSSSYSTSSDPLIFAPSPESPESPETLPESLEEYFDVTEHGAIADGETQSQTAFLSAWEAACSHNGSGDSMF YVPEGIYFVGPMVFQGPCFNGKSPKIRIRGSLVAPTSLSAFNNSNWIQFKNLNEIDLTGANELSEIDGRGAVEAWKQDSCIKESRCKQIVTSLKFSNVSH GTISNITLSNGKGFHLGFYFCNNIKVENVAVLSPWDSPNTDGIHISRSVNITVDSSTIGVGDDCVSIGPGSVNVTVSNVQCGPGHGISIGSLGKYPDEED VIGITVSNCTINGTQNGIRVKTWPGSPAGSASGIIFQNIVMINVSNPVMIDQEYCPSRTCNITKPSLVKLRDIDVRNVTGTYNSEAPMPPVSLLCSSHEP CENINLININLRPTEDGNSRQGLFQIKGLFNGLHVFPSVTSPQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18180			Pectin lyase-like superfamily ...		Lus10016824 [exp]	0	1
					Lus10031358 [exp]	6.7	0.6478
					Lus10034896 [exp]	9.5	0.6897
AT1G53240		mMDH1	mitochondrial malate dehydroge...		Lus10036186 [exp]	11.2	0.6206
AT4G02600		MLO1, ATMLO1	MILDEW RESISTANCE LOCUS O 1, S...		Lus10001336 [exp]	38.2	0.6327
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10016895 [exp]	39.3	0.5945
AT1G17450			B-block binding subunit of TFI...		Lus10022088 [exp]	80.2	0.6170
AT3G23600			alpha/beta-Hydrolases superfam...		Lus10000665 [exp]	142.2	0.5876
AT4G35370			Transducin/WD40 repeat-like su...		Lus10004613 [exp]	146.6	0.5828

Compare expression of checked genes

Lus10016824 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.