Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06790 265 / 2e-89 plastid developmental protein DAG, putative (.1.2) AT3G15000 180 / 3e-54 cobalt ion binding (.1) AT1G11430 156 / 6e-47 plastid developmental protein DAG, putative (.1) AT2G33430 155 / 9e-47 DAL1, DAL differentiation and greening-like 1 (.1) AT1G32580 154 / 7e-46 plastid developmental protein DAG, putative (.1) AT2G35240 151 / 5e-45 plastid developmental protein DAG, putative (.1) AT4G20020 124 / 6e-33 unknown protein AT1G72530 113 / 1e-30 plastid developmental protein DAG, putative (.1.2) AT5G44780 105 / 1e-25 unknown protein AT1G53260 90 / 3e-21 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043130 [exp] 189 / 7e-57 AT3G15000 284 / 6e-92 cobalt ion binding (.1) Lus10014696 [exp] 186 / 2e-56 AT3G15000 291 / 1e-95 cobalt ion binding (.1) Lus10032618 [exp] 184 / 6e-56 AT3G15000 301 / 2e-99 cobalt ion binding (.1) Lus10032619 [exp] 174 / 2e-53 AT3G15000 223 / 3e-71 cobalt ion binding (.1) Lus10018398 [exp] 152 / 5e-46 AT1G11430 309 / 2e-108 plastid developmental protein DAG, putative (.1) Lus10007615 [exp] 154 / 6e-46 AT1G11430 314 / 2e-109 plastid developmental protein DAG, putative (.1) Lus10011789 [exp] 147 / 3e-43 AT1G32580 341 / 5e-120 plastid developmental protein DAG, putative (.1) Lus10023744 [exp] 147 / 4e-43 AT1G32580 342 / 2e-120 plastid developmental protein DAG, putative (.1) Lus10036589 [exp] 135 / 4e-37 AT4G20020 271 / 1e-87 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G007200 [exp] 275 / 5e-93 AT3G06790 269 / 6e-91 plastid developmental protein DAG, putative (.1.2) Potri.011G112200 [exp] 188 / 3e-57 AT3G15000 245 / 2e-77 cobalt ion binding (.1) Potri.001G393400 [exp] 187 / 6e-57 AT3G15000 263 / 2e-84 cobalt ion binding (.1) Potri.011G032900 [exp] 155 / 1e-46 AT1G11430 261 / 1e-88 plastid developmental protein DAG, putative (.1) Potri.010G068300 [exp] 153 / 2e-45 AT1G32580 314 / 2e-109 plastid developmental protein DAG, putative (.1) Potri.008G169900 [exp] 152 / 4e-45 AT1G32580 284 / 2e-97 plastid developmental protein DAG, putative (.1) Potri.003G015100 [exp] 133 / 9e-36 AT4G20020 239 / 2e-74 unknown protein Potri.004G218650 [exp] 91 / 1e-20 AT4G20020 187 / 5e-53 unknown protein Potri.004G218800 [exp] 91 / 1e-20 AT4G20020 182 / 8e-51 unknown protein Potri.010G237200 [exp] 66 / 5e-12 AT3G20930 429 / 5e-150 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016825 pacid=23179075 polypeptide=Lus10016825 locus=Lus10016825.g ID=Lus10016825.BGIv1.0 annot-version=v1.0 ATGGCGAATCTCGCAGCACGTCGTAGTTTAGCGAGGCTCCTATCGAGGGGGCTATCCTCTTCTCCTTCCTCCACTTCACCCCCCCTACTATCTTCTCGTT CGCGCTTCACTTCTGCTCTCGCCGACAAAGCGTGCTTGACCCGGTTGTCGCCTCAATCCATCTATATCCCGACCCGATTCAAGACATCCAGGTCGGGTTA CTCTCCGCTCAACGATGCGTCGCCGAATTGGAGCAACCGGCCGCCGAAGGAGACGATCATGCTCGACGGCTGCGACTATGAGCACTGGCTGATTGTGTTG GAGTTCCCCGAAGACCCTAAACCCTCCGAGGAAGAGATGATTAAGGCTTATGTTAAAACCCTCGCTGCCGTCGTTGGAAGTGAGGAGGAGGCGATTAAGA AGATATATTCGGTTGCCACCAAGACCTACACTGGATTTGGTGCTTTGATCTCTGAGGAGCTCTCCTACAAAGTTAAAGAGGTCCCTGGCGTTCTGTGGGT GCTTCCAGATTCATATCTTGATGTGCCTAACAAAGATTATGGAGGCGATCTTTTTGTAGATGGGAAAGTTATCCACAGGCCTCAGTATTGGTACAATGAT AGCCAGAACTCTAGGAATTACAGGCCTCGCCCACGGTATGATCGTCGGAGGGAGACAATGCAGGTTAATAGACGACAGCCTATGCAAACACCACCTGCTA TCAGCAGTCAGAACCACTCGCCACAGAATCCAGGGGGGTCTGATCCATCTTTCCCCTCCATGAACCAGCCGCAGCAGCAAGGACAGCAGTTTAACACTGG TTCTTGA
AA sequence Show only first row Show all	>Lus10016825 pacid=23179075 polypeptide=Lus10016825 locus=Lus10016825.g ID=Lus10016825.BGIv1.0 annot-version=v1.0 MANLAARRSLARLLSRGLSSSPSSTSPPLLSSRSRFTSALADKACLTRLSPQSIYIPTRFKTSRSGYSPLNDASPNWSNRPPKETIMLDGCDYEHWLIVL EFPEDPKPSEEEMIKAYVKTLAAVVGSEEEAIKKIYSVATKTYTGFGALISEELSYKVKEVPGVLWVLPDSYLDVPNKDYGGDLFVDGKVIHRPQYWYND SQNSRNYRPRPRYDRRRETMQVNRRQPMQTPPAISSQNHSPQNPGGSDPSFPSMNQPQQQGQQFNTGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06790			plastid developmental protein ...		Lus10016825 [exp]	0	1
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10007267 [exp]	3.2	0.9357
AT3G58470			nucleic acid binding;methyltra...		Lus10000248 [exp]	5.5	0.9303
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10035650 [exp]	6.9	0.9323
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10004942 [exp]	8.7	0.9304
AT3G17465		RPL3P	ribosomal protein L3 plastid (...		Lus10033666 [exp]	8.8	0.9294
AT5G19730			Pectin lyase-like superfamily ...		Lus10012942 [exp]	10.2	0.9279
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Lus10001681 [exp]	11.4	0.9308
AT2G27730			copper ion binding (.1)		Lus10020624 [exp]	12.0	0.9148
AT1G31220			Formyl transferase (.1)		Lus10013428 [exp]	14.5	0.8917
AT3G11710		ATKRS-1	lysyl-tRNA synthetase 1 (.1)		Lus10001440 [exp]	14.6	0.8973

Compare expression of checked genes

Lus10016825 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.