Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16760 350 / 4e-116 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G25230 59 / 3e-09 ROF1, ATFKBP62 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) AT5G20360 48 / 2e-05 Phox3 Phox3, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) AT2G25290 47 / 4e-05 Phox1 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein AT1G56090 45 / 5e-05 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G32070 45 / 0.0001 Phox4 Phox4, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) AT5G48570 43 / 0.0005 ROF2, ATFKBP65 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002338 [exp] 60 / 3e-09 AT3G25230 874 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10035117 [exp] 58 / 3e-09 AT4G30480 291 / 3e-99 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10031983 [exp] 59 / 6e-09 AT4G30480 222 / 9e-76 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10031195 [exp] 58 / 6e-09 AT1G56090 260 / 8e-87 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003171 [exp] 59 / 8e-09 AT3G25230 871 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10031774 [exp] 57 / 1e-08 AT1G56090 259 / 2e-86 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025888 [exp] 56 / 7e-08 AT3G25230 870 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10038216 [exp] 55 / 9e-08 AT3G25230 870 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10008024 [exp] 50 / 2e-06 AT1G56090 218 / 8e-71 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G007000 [exp] 408 / 1e-138 AT3G16760 267 / 6e-84 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.006G178900 [exp] 63 / 8e-11 AT4G30480 275 / 1e-92 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.002G248300 [exp] 54 / 2e-07 AT3G25230 857 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Potri.014G149400 [exp] 50 / 3e-06 AT5G48570 741 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.005G097300 [exp] 49 / 4e-06 AT1G56090 260 / 2e-86 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G121100 [exp] 49 / 6e-06 AT2G25290 737 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Potri.001G255000 [exp] 44 / 0.0003 AT5G12430 738 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Potri.006G033400 [exp] 44 / 0.0003 AT5G48570 596 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.016G105100 [exp] 44 / 0.0004 AT3G54010 825 / 0.0 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016826 pacid=23179028 polypeptide=Lus10016826 locus=Lus10016826.g ID=Lus10016826.BGIv1.0 annot-version=v1.0 ATGAATTCCAATTACGGCAAAAGTTCATCTAGTGGGTCAACGAATGCCTTCAATTTTGATCTCGGCATTGGATCGAATCGTTCTAAACCTCTGAACGATA TGAAGAATCAGAACTCGTCTGGTTATTCGTCGTTTTCGTATTCATCGTCAACAACGTCCACGGCGCAACCGAGGCCTGCTTTTCAACCGGGGAAGCCTTC CTGGACTCACCAACCTGCTGCTCCAAGTCAACCAGCTCGGACTGGTTTATTAGATGGGCCGAATTCGATGGTGGGAGATATTTTTGGCAAGACGTGGAGC TCTACTGGTCCAGCTAAAGGTTCTGGGATTGGGATCGGAATTGCGGAGAAGAATCCGAATTTGTTCGGCGATCTTGTTAGCTCTGCTCTGGGGCAGGGAA ACAAGGGTTCCAGCACTGCTCCTTTGAAGAATGCGACTCCAGCAACGAGTAAGAGCGCCTATTCAATGGGAAATGTGGCAGATTCTTTGCCTAAGGTTGG TAATCCGGTGCAAGGAGGTGCAGGTTGGGGATCTAATGGGAGTTTTGGGGGTTCCTCTGGTGGATACAATAGGAATGTTAGCAATGCTACTGCTAGTAAT GTTGGTAGTAATGCTAATAAAAGTTCGAGCATTGGTGGCACTTCGATGAAAGGTGTGGCTAGCGGTGGAGGAATGATGAGCGGAAACAAGGATCCATTTG TTTCTCTGGTGGATTTCTCGTCGAAACCTCAGTCTGGTAATCTTAATTCTGGTCCTAAAGGGAAAAAAGTCAATGATGCATTTGGGGATTTTCAGAATGC TTCAAAACCAACCTCACCGTCAGTTCCTTCTTCCGGTGCAAGTAATGGTGACTTCTTTGGATCGAGTATGGGAACCAGCTCTAATATAGCTGACTTTGGA ATGCCAAGCAATGATTTTGGCTCGCAGAAACAGTCTTCTGTTCCAACCACAGGTGACGATCCACTTGGAATGTTCTTCAACGCATCATCAGGAGGTGCCG CACCAGCATCTGCAGCAACTGGGCAGCAGTTCTCGGAACTTGATGACTGGGGAGTGGATTCAGGTTTTGGAGGAGGTGCTGAAGATGCAGGTGGTTCCAC TACGGAGCTTGAAGGCCTTCCTCCACCACCTGCAGGGGTTTCAGCTTCCTCGGCAAAGAGCAAGGGTGCAGATCATCAAAAGAACGGACAGTATGCTGAT GCTATTAAGTGGTTGTCTTGGGCTGTGGTGCTTCTTGAAAAAACTAATGATAAAGCATTGACTGTCGAAGTTCTTTCAACTAGAGCCTCATGTTATAAGG AAGTTGGCGAGTACAAGAAGGCAGTGGCTGACTGCTCAAAGGTGCTCGAAGGGGATGAAACCAATGTATCAGTGTTAGTCCAGCGTGCACTTCTATACGA GAGCATGGAGAAGTATAGGCTGGGAGCTGAGGACCTGAGGGCTGTTCTGAAGATCGATCCAATGAACAGGATTGCTAGGAGTACTGTTCATCGCCTATCT AAAATGGCAGAATAG
AA sequence Show only first row Show all	>Lus10016826 pacid=23179028 polypeptide=Lus10016826 locus=Lus10016826.g ID=Lus10016826.BGIv1.0 annot-version=v1.0 MNSNYGKSSSSGSTNAFNFDLGIGSNRSKPLNDMKNQNSSGYSSFSYSSSTTSTAQPRPAFQPGKPSWTHQPAAPSQPARTGLLDGPNSMVGDIFGKTWS STGPAKGSGIGIGIAEKNPNLFGDLVSSALGQGNKGSSTAPLKNATPATSKSAYSMGNVADSLPKVGNPVQGGAGWGSNGSFGGSSGGYNRNVSNATASN VGSNANKSSSIGGTSMKGVASGGGMMSGNKDPFVSLVDFSSKPQSGNLNSGPKGKKVNDAFGDFQNASKPTSPSVPSSGASNGDFFGSSMGTSSNIADFG MPSNDFGSQKQSSVPTTGDDPLGMFFNASSGGAAPASAATGQQFSELDDWGVDSGFGGGAEDAGGSTTELEGLPPPPAGVSASSAKSKGADHQKNGQYAD AIKWLSWAVVLLEKTNDKALTVEVLSTRASCYKEVGEYKKAVADCSKVLEGDETNVSVLVQRALLYESMEKYRLGAEDLRAVLKIDPMNRIARSTVHRLS KMAE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16760			Tetratricopeptide repeat (TPR)...		Lus10016826 [exp]	0	1
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Lus10017404 [exp]	2.6	0.9125
AT2G35120			Single hybrid motif superfamil...		Lus10018319 [exp]	3.2	0.8892
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Lus10010933 [exp]	4.0	0.8748
AT3G59480			pfkB-like carbohydrate kinase ...		Lus10020346 [exp]	5.5	0.8816
AT3G11330		PIRL9	plant intracellular ras group-...		Lus10017948 [exp]	5.9	0.8766
AT5G51830			pfkB-like carbohydrate kinase ...		Lus10031668 [exp]	7.9	0.8743
AT2G45290			Transketolase (.1)		Lus10000789 [exp]	8.0	0.8824
AT5G08160		ATPK3	serine/threonine protein kinas...		Lus10013493 [exp]	8.1	0.8419
AT5G50850		MAB1	MACCI-BOU, Transketolase famil...		Lus10043191 [exp]	8.4	0.8532
AT2G32510		MAPKKK17	mitogen-activated protein kina...		Lus10030042 [exp]	8.4	0.8230

Compare expression of checked genes

Lus10016826 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.