Plant FIBer expression Database

Lus10016828 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G06780 52 / 5e-08 glycine-rich protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037706
[exp]
119 / 5e-33 AT3G06780 61 / 3e-11 glycine-rich protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G006600
[exp]
87 / 2e-21 AT3G06780 61 / 2e-11 glycine-rich protein (.1)
Potri.008G211000
[exp]
83 / 1e-19 AT3G06780 61 / 1e-11 glycine-rich protein (.1)
PFAM info
Representative CDS sequence
>Lus10016828 pacid=23179068 polypeptide=Lus10016828 locus=Lus10016828.g ID=Lus10016828.BGIv1.0 annot-version=v1.0
ATGGCAGTCGGTTTGTCCATCGTCACTGATGCAACCACGGCTTTGGCAAACGAACAGGGGCCAGGGTTTGGGATTGGGAATTTGGCTCTTCCGCGCCTGA
GATTTCTCTCGATCAACAACCTCATGGCCTCCGATTCCGCCGCCGATCAGCTCGCCCACTGTCGCCAAAGCTCGGCAATTATCGTGGACGTGGTGGCGCC
ACCACCCGTCAAGCCAGACAGATTCCGATCTGCTCGGCGGACGCTTACCCGTAGAAGGCGACGTACCAAGCGGAGATCCTCAACTGATGGTGGAGACTCA
GGTGATTTCGGCGGAGAGTACGGGATTTTCGGCGGGGACGATGGCGGCAACGGACCGTTTGGATTCGGCGGCGGTGGAGGGAATTGGGGGAGCGGAGGCG
GAGGCGGGTGGAATTTCGGCAGATTCGGGGAGCAAAATTGGGATGAATCATCGTCGTCTTCATGGTGGTCGGCTTCTGGGTTCGCTTATGGATTCATCTA
TGAGGTGATATATTGGATTGCACTATCTAACTGTGTACATTTCGCGTTCAAGAAGGTTGCTAAGATCATGGCGGGTAGGATTGGTGATAGTGGGAATGGC
GCCAAGGTTCGAATAAGACTGGCTTCCATTTCCGTCTACTAA
AA sequence
>Lus10016828 pacid=23179068 polypeptide=Lus10016828 locus=Lus10016828.g ID=Lus10016828.BGIv1.0 annot-version=v1.0
MAVGLSIVTDATTALANEQGPGFGIGNLALPRLRFLSINNLMASDSAADQLAHCRQSSAIIVDVVAPPPVKPDRFRSARRTLTRRRRRTKRRSSTDGGDS
GDFGGEYGIFGGDDGGNGPFGFGGGGGNWGSGGGGGWNFGRFGEQNWDESSSSSWWSASGFAYGFIYEVIYWIALSNCVHFAFKKVAKIMAGRIGDSGNG
AKVRIRLASISVY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G06780 glycine-rich protein (.1) Lus10016828
[exp]
0 1
AT1G64140 unknown protein Lus10032329
[exp]
1.4 0.8981
AT3G03980 NAD(P)-binding Rossmann-fold s... Lus10020265
[exp]
1.7 0.9133
AT3G06780 glycine-rich protein (.1) Lus10037706
[exp]
5.2 0.8904
AT5G57900 SKIP1 SKP1 interacting partner 1 (.1... Lus10034452
[exp]
5.3 0.8593
AT5G35732 unknown protein Lus10006404
[exp]
6.9 0.8741
AT4G33940 RING/U-box superfamily protein... Lus10012062
[exp]
7.4 0.8623
AT1G47710 Serine protease inhibitor (SER... Lus10032754
[exp]
8.8 0.8089
AT1G26800 RING/U-box superfamily protein... Lus10037170
[exp]
11.4 0.8460
Lus10033310
[exp]
12.5 0.8615
AT3G26000 Ribonuclease inhibitor (.1) Lus10006438
[exp]
15.2 0.8230

Lus10016828 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.