Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16780 333 / 9e-118 Ribosomal protein L19e family protein (.1) AT4G02230 317 / 2e-111 Ribosomal protein L19e family protein (.1) AT1G02780 311 / 4e-109 EMB2386 embryo defective 2386, Ribosomal protein L19e family protein (.1) AT4G16030 70 / 2e-15 Ribosomal protein L19e family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038417 [exp] 332 / 3e-117 AT3G16780 348 / 9e-124 Ribosomal protein L19e family protein (.1) Lus10037707 [exp] 340 / 6e-117 AT3G16780 343 / 8e-118 Ribosomal protein L19e family protein (.1) Lus10038418 [exp] 316 / 3e-110 AT3G16780 337 / 3e-118 Ribosomal protein L19e family protein (.1) Lus10023387 [exp] 324 / 1e-109 AT3G16780 343 / 1e-116 Ribosomal protein L19e family protein (.1) Lus10023388 [exp] 306 / 2e-107 AT3G16780 324 / 2e-114 Ribosomal protein L19e family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G140800 [exp] 340 / 1e-120 AT3G16780 315 / 2e-110 Ribosomal protein L19e family protein (.1) Potri.004G078000 [exp] 335 / 2e-118 AT1G02780 309 / 4e-108 embryo defective 2386, Ribosomal protein L19e family protein (.1) Potri.012G037500 [exp] 331 / 1e-116 AT1G02780 317 / 2e-111 embryo defective 2386, Ribosomal protein L19e family protein (.1) Potri.015G029500 [exp] 330 / 1e-116 AT3G16780 309 / 5e-108 Ribosomal protein L19e family protein (.1) Potri.015G037100 [exp] 236 / 7e-80 AT1G02780 201 / 5e-66 embryo defective 2386, Ribosomal protein L19e family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01280 [flax] [poplar] Ribosomal_L19e Ribosomal protein L19e
Representative CDS sequence Show only first row Show all	>Lus10016829 pacid=23179098 polypeptide=Lus10016829 locus=Lus10016829.g ID=Lus10016829.BGIv1.0 annot-version=v1.0 ATGGTGTCGTTGAAACTCCAGAAGCGGCTTGCCGCCAGCGTGCTGAAGTGCGGGAAGGGAAAGGTCTGGCTTGATCCCAATGAGTGCAACGAACTCTCAA TGGCCAACTCCAGGCAAAACATCAGGAAGCTGATTAGCGATGGCTTCATCATTAGGAAGCCGACCAATATCCATTCGAGGTCTCGTGCGCGAAGGATGAA TGAGGCCAAGAGAAAGGGTCGCCACTCTGGATACGGTAAAAGGAAGGGTACAAGGGAGGCTAGGTTGCCGACCAAGATCCTGTGGATGAGGAGGATGCGA GTCCTGAGGCGTCTTCTGCGCAAGTACCGTGAAGCCAAGAAGATTGACAGGCATATGTACCATGATATGTACATGAAGGTGAAAGGTAATGTTTTCAAGA ACAAGCGTGTACTTATGGAGAGCATCCACAAGACCAAGGCTGAAAAGGCACGAGAGAAGACACTGTCTGATCAGTTTGAAGCTAAGCGTGCTAAGAACAA GGCCAGCAGGGAGAGGAAGTTGGCAAGAAGAGAAGAGCGTTTTGCACAAGGACCTGGGGCGGAGAAGGCACAACCTACACCTGCACCTCAACAGACAGAG GGAGCAAAGAAGAAGTCTAAGAAGTGA
AA sequence Show only first row Show all	>Lus10016829 pacid=23179098 polypeptide=Lus10016829 locus=Lus10016829.g ID=Lus10016829.BGIv1.0 annot-version=v1.0 MVSLKLQKRLAASVLKCGKGKVWLDPNECNELSMANSRQNIRKLISDGFIIRKPTNIHSRSRARRMNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMR VLRRLLRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKTKAEKAREKTLSDQFEAKRAKNKASRERKLARREERFAQGPGAEKAQPTPAPQQTE GAKKKSKK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16780			Ribosomal protein L19e family ...		Lus10016829 [exp]	0	1
AT3G16780			Ribosomal protein L19e family ...		Lus10037707 [exp]	1.0	0.9488
AT3G16780			Ribosomal protein L19e family ...		Lus10038417 [exp]	4.5	0.9417
AT1G04480			Ribosomal protein L14p/L23e fa...		Lus10020499 [exp]	6.0	0.9404
AT5G56710			Ribosomal protein L31e family ...		Lus10015698 [exp]	8.9	0.9415
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10023454 [exp]	9.7	0.9425
AT5G56710			Ribosomal protein L31e family ...		Lus10037703 [exp]	11.6	0.9318
AT3G11940		AML1, ATRPS5A	ARABIDOPSIS MINUTE-LIKE 1, rib...		Lus10008436 [exp]	12.2	0.9423
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10004942 [exp]	14.0	0.9338
AT2G32060			Ribosomal protein L7Ae/L30e/S1...		Lus10027800 [exp]	15.4	0.9392
AT3G11510			Ribosomal protein S11 family p...		Lus10022693 [exp]	15.5	0.9389

Compare expression of checked genes

Lus10016829 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.