Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16785 1547 / 0 PLDZ1, PLDZETA1, PLDP1 PHOSPHOLIPASE D ZETA1, PHOSPHOLIPASE D ZETA 1, phospholipase D P1 (.1) AT3G05630 1274 / 0 PLDP2, PDLZ2, PLDZETA2 PHOSPHOLIPASE D ZETA 2, phospholipase D P2 (.1) AT5G25370 111 / 1e-24 PLDALPHA3 phospholipase D alpha 3 (.1) AT4G00240 102 / 6e-22 PLDBETA2 phospholipase D beta 2 (.1) AT2G42010 101 / 2e-21 PLDBETA1 phospholipase D beta 1 (.1) AT4G35790 100 / 3e-21 ATPLDDELTA ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) AT1G55180 100 / 4e-21 PLDALPHA4, PLDEPSILON phospholipase D alpha 4 (.1) AT1G52570 100 / 5e-21 PLDALPHA2 phospholipase D alpha 2 (.1) AT4G11830 99 / 7e-21 PLDGAMMA2 phospholipase D gamma 2 (.1.2) AT4G11840 99 / 9e-21 PLDGAMMA3 phospholipase D gamma 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020672 [exp] 1397 / 0 AT3G05630 1393 / 0.0 PHOSPHOLIPASE D ZETA 2, phospholipase D P2 (.1) Lus10037708 [exp] 1228 / 0 AT3G16785 885 / 0.0 PHOSPHOLIPASE D ZETA1, PHOSPHOLIPASE D ZETA 1, phospholipase D P1 (.1) Lus10029873 [exp] 1161 / 0 AT3G16785 1199 / 0.0 PHOSPHOLIPASE D ZETA1, PHOSPHOLIPASE D ZETA 1, phospholipase D P1 (.1) Lus10036361 [exp] 108 / 1e-23 AT1G55180 968 / 0.0 phospholipase D alpha 4 (.1) Lus10026375 [exp] 102 / 7e-22 AT2G42010 1154 / 0.0 phospholipase D beta 1 (.1) Lus10042282 [exp] 102 / 9e-22 AT2G42010 940 / 0.0 phospholipase D beta 1 (.1) Lus10041787 [exp] 101 / 2e-21 AT1G52570 1087 / 0.0 phospholipase D alpha 2 (.1) Lus10012699 [exp] 100 / 4e-21 AT4G35790 1075 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10001293 [exp] 99 / 1e-20 AT4G35790 1071 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G211100 [exp] 1721 / 0 AT3G16785 1622 / 0.0 PHOSPHOLIPASE D ZETA1, PHOSPHOLIPASE D ZETA 1, phospholipase D P1 (.1) Potri.010G006300 [exp] 1694 / 0 AT3G16785 1607 / 0.0 PHOSPHOLIPASE D ZETA1, PHOSPHOLIPASE D ZETA 1, phospholipase D P1 (.1) Potri.013G012300 [exp] 1443 / 0 AT3G16785 1437 / 0.0 PHOSPHOLIPASE D ZETA1, PHOSPHOLIPASE D ZETA 1, phospholipase D P1 (.1) Potri.003G037700 [exp] 110 / 2e-24 AT1G55180 1031 / 0.0 phospholipase D alpha 4 (.1) Potri.005G246000 [exp] 107 / 2e-23 AT4G35790 1170 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.002G016100 [exp] 107 / 2e-23 AT4G35790 1194 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.001G112100 [exp] 103 / 3e-22 AT2G42010 1307 / 0.0 phospholipase D beta 1 (.1) Potri.005G105600 [exp] 103 / 5e-22 AT4G35790 1289 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.006G253900 [exp] 102 / 1e-21 AT3G15730 1144 / 0.0 phospholipase D alpha 1 (.1) Potri.007G060300 [exp] 101 / 2e-21 AT4G35790 1281 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0479 [flax] [poplar] PLD PF00614 [flax] [poplar] PLDc Phospholipase D Active site motif
Representative CDS sequence Show only first row Show all	>Lus10016830 pacid=23179061 polypeptide=Lus10016830 locus=Lus10016830.g ID=Lus10016830.BGIv1.0 annot-version=v1.0 ATGGCGTCTTCTCAGCAGTTTATGGACGGTATTGGTCGTGGTGGAGGACCTCGATACGTCCAAATGCACGCCGATTCTCCGCCGTCGGTTCCGCCGGCGA TGTCCTCGTCTTTCTTCTCGTTCCAAGGTCCCGTCCCCGAGCAGTCGCGGATTTTCGAGGAGTTGCCTAGTGCAATGATCGTTCACGTCTCTCGCCCTGA CGCCGGCGATATCAGCCCCGTTCTTCTCTCCTACACCGTCGAGTTTCAGTACAAACAGGCACGCGTGTTCTCGATTTTGGGATCTCTTTTATTTGTTGAA TGCCGATTGGTTGAATTGATGTGTTTTTTTTTCTTCAAGTGGAAATTGGAGAAGACGGCTGCACAAGTGTTCTACCTACATTTTGCTTTGAAGAAACGTG CGTTCTTTGAGGAACTTCAGGAGAAGCAGGAACAGGTTAAAGACTGGCTTCAAAACCTGGGAATAGGGGAGAATGCGCAAGCAGTAGAAGATGAGGATGA TGACGTAGTACATGTACAACATCAGGATGAAAGTGCTAAGAACAGAGATGTCCCCTCGAGTGCTGCATTACCTGTTTTTCGTCCGTTGGGGAGGCAGCAG TCAATGTCAGATAGAGCCAAGGTTGCAATGCAACAGTATCTGAACCATTTTATGGGAAATTTGGATATTGTCAACTCCCGAGAGGTTTGCAAATTTTTAG AGGTTTCTAAGTTATCCTTTTGCCATGAATATGGACCTAAGCTCAAAGAAGATTATATTATGGTAAAGCATCTGCCAAAAATCCCAACAGTTGATGACAA CAGGAAATGTTGCTCTTGCAGTTGGTTTGGCTGCTGTAATGACAACTGGCAGAAGGTGTGGGCTGTCCTAAAGCCTGGATTCTTAGCCGTACTTGCTGAT CCTTTTGATGCAAAGCCGTTGGATATAATTGTTTTTGATGTCCTACCAGCCTCTGATGGAGATGGAGATGGACGAGTTTCACTTGCAACAGAAACGAAGG AACGCAATCCCTTGCGGCATACATTTAAGGTCACAAGCGGCAACCGGAGTATAAAATTGAGAGTCAGAAATGGTGCTAGAATTAAAGATTGGGTTTCTGC CATCAATGATGCTGGACTTAGGCCCCCTGAGGGCTGGTGTCATCCTCATCGATTTGGCTCGTTTGCTCCTCCTAGGGGATTATCTGATGATGGTAGTCAA GCTCAATGGTTTATAGATGGCAGGGCAGCTTTTGAAGCTATCGCTTCAGCAATCGAGGATGCTAAATCAGAGATATTTATTTGTGGCTGGTGGCTTTGCC CTGAACTTTATCTAAGACGACCATTTCAAAACCATGCATCTTCTAGGCTTGATGCTTTGCTGGAGGCCAAAGCTAAGCAAGGTGTTCAGATATACATTCT TCTCTACAAGGAGGTTGCTCTTGCTCTCAAAATCAACAGTGTTTATAGCAAGAAAAAACTTCTTAGCATTCATGAGAATGTACGTGTGCTGCGCTATCCT GACCACTTTTCTTGTGGGGTATATCTTTGGTCACACCATGAGAAGCTTGTCATTATTGATCACCACATTTGTTTTATTGGAGGATTGGACTTATGTTTTG GTCGTTATGATTCAACTGAACATAAAGTGGGTGACTGCCCCCCGCTAATCTGGCCTGGAAAAGATTATTATAACCCAAGGGAATCTGAACCAAATTCTTG GGAAGATACAATGAAAGATGAATTGGATCGTACAAAGTATCCCCGAATGCCTTGGCATGACGTCCACTGTGCCTTATGGGGGCCACCTTGCCGTGATATA GCTAGGCACTTCGTTCAACGGTGGAACCATGCCAAGAGAAATAAAGCTCCATATGAGGAAGCAATTCCACTGCTTATGCCTCAACAGCACATGGTTATTC CTCATTATATGGGAAACTCATCTCCTGTGGAGATCAAGAGCAAAAATGTAGACGGTAATGGTAAAATCCCAATGCAAGATTCCTCATCTAGATCATCTTT CCAAGACATCCCATTGCTTTTACCTCAAGAAACTGAGGAACTTGATGGTTCTACTGGTGGCCCAAAGTCTAATGGAGTTGATGGTACAGCTGGTAGAGGC TCGAATTCATTAAGGAAAGCTAAGGTAGCACCATTAGCTCCAGAAATGCCAATGAAAAGCTTTGTAGATGACCGTGACTCTTCGGATATCTATGGGAAAA TATCTCCGGATTGGACACAACCTGGTATTAGGCCTTCTGATTTGGAGTGGTGGGAAACTCAGGAGAGAGGCGACCAGATAGGTTCGGGTGATGAAACAGG GGAAGTTGGCCCACAGGCGTCTTGCCAGTGTCAGATTCTGAGGAGTGTAAGTCAGTGGTCTGCCGGAACAAGCCAAACTGAAGATAGTATTCACAATGCT TACTGTTCTCTTATTGAGAAAGCAGAACATTTTATCTACATCGAGAATCAATTTTTTATATCAGGTCTTTCAGGAGATGATGTCATAAAGAACCGGGTGC TAGAGTCACTATATAAGCGAATAATGAGAGCGTACATTGACAAGAAGTGTTTCCGGGTTATCATCATAATACCTCTGATTCCAGGTTTCCAGGGTGGTCT GGATGATGCTGGTGCTGCATCTGTCAGAGCCATAATGCACTGGCAGCATCGAACTATTTGCAAGGGACAGCATTCAGTGTTACATAATCTTTATGAGCTT CTTGGCCCTAGAGTACAAGATTACATTTCGTTCTACGGCCTTAGATCTCATGGTCGGGTTTCAGGTGGTGGCCCAATGGCTACTAGTCAGGTATATGTTC ATAGTAAAATCATGATCATTGATGACCGCACAGCCTTGATTGGATCCGCTAATATCAACGACAGAAGTCTTCTTGGTTCTCGAGATTCAGAGATCGCCGT ACTTATCGAGGACAAGGAGTTAGTTGACTCCTCAATGGGTGGGAAGCCATGGAAGGCTGGTAAATTTGCTCTGAGCCTTCGCGTCTCACTTTGGTCGGAA CACCTCGGTCTTCGCCCCGGTGGAGAGATGAAACAAATTTTTGACCCAGTGATTGATACAACATACAGAGACATTTGGATAGCAACTGCTAGGATGAACA CGACTATATACCAGGAGGTGTTCTCTTGCATACCGAACGATCTAATCCATTCGAGAGCGGCACTCCGGCAGAGCTTAGCATCGTGGAAGGAGAAGCTGGG CCACACAACGATCGACCTAGGGATAGCCCCTGAGATGCTCGAATCGTACTTGAAAGGAGACGTCAAAGACTCGAGTCCATCGGAGAGACTGAAAGCCGTG AAGGGGCACCTGGTTTCTTTCCCACTGGATTTCATGTGCAAGGAAGACTTAAGACCCATGTTCAGCGAGAGCGAGTATTATGCATCTCATGTTTTCCATT GA
AA sequence Show only first row Show all	>Lus10016830 pacid=23179061 polypeptide=Lus10016830 locus=Lus10016830.g ID=Lus10016830.BGIv1.0 annot-version=v1.0 MASSQQFMDGIGRGGGPRYVQMHADSPPSVPPAMSSSFFSFQGPVPEQSRIFEELPSAMIVHVSRPDAGDISPVLLSYTVEFQYKQARVFSILGSLLFVE CRLVELMCFFFFKWKLEKTAAQVFYLHFALKKRAFFEELQEKQEQVKDWLQNLGIGENAQAVEDEDDDVVHVQHQDESAKNRDVPSSAALPVFRPLGRQQ SMSDRAKVAMQQYLNHFMGNLDIVNSREVCKFLEVSKLSFCHEYGPKLKEDYIMVKHLPKIPTVDDNRKCCSCSWFGCCNDNWQKVWAVLKPGFLAVLAD PFDAKPLDIIVFDVLPASDGDGDGRVSLATETKERNPLRHTFKVTSGNRSIKLRVRNGARIKDWVSAINDAGLRPPEGWCHPHRFGSFAPPRGLSDDGSQ AQWFIDGRAAFEAIASAIEDAKSEIFICGWWLCPELYLRRPFQNHASSRLDALLEAKAKQGVQIYILLYKEVALALKINSVYSKKKLLSIHENVRVLRYP DHFSCGVYLWSHHEKLVIIDHHICFIGGLDLCFGRYDSTEHKVGDCPPLIWPGKDYYNPRESEPNSWEDTMKDELDRTKYPRMPWHDVHCALWGPPCRDI ARHFVQRWNHAKRNKAPYEEAIPLLMPQQHMVIPHYMGNSSPVEIKSKNVDGNGKIPMQDSSSRSSFQDIPLLLPQETEELDGSTGGPKSNGVDGTAGRG SNSLRKAKVAPLAPEMPMKSFVDDRDSSDIYGKISPDWTQPGIRPSDLEWWETQERGDQIGSGDETGEVGPQASCQCQILRSVSQWSAGTSQTEDSIHNA YCSLIEKAEHFIYIENQFFISGLSGDDVIKNRVLESLYKRIMRAYIDKKCFRVIIIIPLIPGFQGGLDDAGAASVRAIMHWQHRTICKGQHSVLHNLYEL LGPRVQDYISFYGLRSHGRVSGGGPMATSQVYVHSKIMIIDDRTALIGSANINDRSLLGSRDSEIAVLIEDKELVDSSMGGKPWKAGKFALSLRVSLWSE HLGLRPGGEMKQIFDPVIDTTYRDIWIATARMNTTIYQEVFSCIPNDLIHSRAALRQSLASWKEKLGHTTIDLGIAPEMLESYLKGDVKDSSPSERLKAV KGHLVSFPLDFMCKEDLRPMFSESEYYASHVFH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16785		PLDZ1, PLDZETA1...	PHOSPHOLIPASE D ZETA1, PHOSPHO...		Lus10016830 [exp]	0	1
AT3G16785		PLDZ1, PLDZETA1...	PHOSPHOLIPASE D ZETA1, PHOSPHO...		Lus10037708 [exp]	3.5	0.8794
AT4G19490		ATVPS54	ARABIDOPSIS THALIANA VPS54 HOM...		Lus10023394 [exp]	6.3	0.8804
AT5G06970			Protein of unknown function (D...		Lus10026160 [exp]	8.7	0.8762
AT5G11700			unknown protein		Lus10007461 [exp]	10.6	0.8732
AT3G50590			Transducin/WD40 repeat-like su...		Lus10009343 [exp]	11.4	0.8722
AT1G01790		ATKEA1, KEA1	K+ efflux antiporter 1, K+ EFF...		Lus10017823 [exp]	13.8	0.8049
AT4G00630		ATKEA2, KEA2	K+ efflux antiporter 2, K+ eff...		Lus10018844 [exp]	16.1	0.8056
AT5G22780			Adaptor protein complex AP-2, ...		Lus10020522 [exp]	17.7	0.8612
AT2G45540			WD-40 repeat family protein / ...		Lus10015858 [exp]	20.2	0.8613
AT1G59820		ALA3	aminophospholipid ATPase 3 (.1...		Lus10030809 [exp]	20.5	0.7791

Compare expression of checked genes

Lus10016830 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.