Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05640 441 / 7e-155 Protein phosphatase 2C family protein (.1.2) AT5G27930 433 / 9e-152 Protein phosphatase 2C family protein (.1.2) AT3G16800 401 / 2e-139 Protein phosphatase 2C family protein (.1.2.3) AT3G02750 303 / 5e-99 Protein phosphatase 2C family protein (.1.2.3) AT1G16220 296 / 2e-96 Protein phosphatase 2C family protein (.1) AT4G03415 295 / 2e-96 Protein phosphatase 2C family protein (.1.2) AT1G79630 290 / 1e-93 Protein phosphatase 2C family protein (.1.2.3) AT5G36250 286 / 5e-93 Protein phosphatase 2C family protein (.1) AT1G03590 282 / 4e-91 Protein phosphatase 2C family protein (.1) AT5G01700 259 / 3e-83 Protein phosphatase 2C family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037709 [exp] 759 / 0 AT3G05640 462 / 2e-163 Protein phosphatase 2C family protein (.1.2) Lus10029874 [exp] 424 / 5e-148 AT5G27930 514 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10031475 [exp] 400 / 1e-138 AT5G27930 456 / 3e-161 Protein phosphatase 2C family protein (.1.2) Lus10015206 [exp] 391 / 3e-135 AT5G27930 451 / 4e-159 Protein phosphatase 2C family protein (.1.2) Lus10022588 [exp] 304 / 2e-100 AT5G36250 421 / 1e-145 Protein phosphatase 2C family protein (.1) Lus10021486 [exp] 299 / 4e-98 AT3G02750 418 / 6e-143 Protein phosphatase 2C family protein (.1.2.3) Lus10041277 [exp] 316 / 7e-98 AT5G21160 563 / 0.0 LA RNA-binding protein (.1.2.3) Lus10037431 [exp] 315 / 6e-97 AT5G21160 643 / 0.0 LA RNA-binding protein (.1.2.3) Lus10039802 [exp] 295 / 6e-96 AT4G03415 652 / 0.0 Protein phosphatase 2C family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G006200 [exp] 495 / 5e-176 AT3G05640 460 / 9e-163 Protein phosphatase 2C family protein (.1.2) Potri.010G006100 [exp] 478 / 3e-169 AT3G05640 451 / 2e-159 Protein phosphatase 2C family protein (.1.2) Potri.013G012200 [exp] 454 / 7e-160 AT5G27930 556 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.005G021900 [exp] 453 / 1e-159 AT5G27930 571 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.019G054200 [exp] 324 / 4e-107 AT3G02750 657 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.013G085500 [exp] 309 / 2e-101 AT3G02750 578 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.019G103100 [exp] 306 / 3e-100 AT4G03415 706 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.013G144100 [exp] 304 / 1e-99 AT4G03415 696 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.016G127900 [exp] 296 / 1e-96 AT5G01700 368 / 9e-125 Protein phosphatase 2C family protein (.1.2) Potri.006G105000 [exp] 293 / 2e-95 AT5G01700 368 / 1e-124 Protein phosphatase 2C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10016831 pacid=23179066 polypeptide=Lus10016831 locus=Lus10016831.g ID=Lus10016831.BGIv1.0 annot-version=v1.0 ATGGTTCTTTTCCCATCTTTCTTCAATGGGTTGGCGAGAACCGTGTCGATGAAGAAAGGGAAACCGTTGGAAGAGAAAGATTGCGGGAAGGAGGCTGCAG AAGAGTTGGCCAAAGATGCTAAAAGGAACGAGCTGATTCTGAGTTCTTCGGGAACTGTTAGTAAGTCCAACAAGTTCGCCTCCGTTTGCTCCAGGCGTGG TCAGAAAGGAGTCAACCAAGACTGCCTCGTCGTCTGGGAGGAATTTGGGTGCCAGGAGGACATGATGCTGTGCGGGGTATTCGACGGGCATGGAACATGG GGACATATGGTTTCGAAACGGGTTAGAGAAACAGTGCCGCAATTTTTGCTCTGCAACTGGCAGGAGACTCTCAAGGCGTCCATTGATACGGAGATGGAAC TTGGGTTGAATGATCACCACCCTCATAATCATCGCCACAGGTTCGAAATCTGGAAGGAGTCTTATTTGAAGACCTACGCCGCTGTCGATCAGCAGCTCAA ACACCATCCCAAGATCGACACTTTCTCCAGCGGATCCACTGCCCTCACCATTGTCAAACAGGGGGAGCATCTAATGATAGCAAATGTGGGAGACTCACGA GCAGTCCTGGGGACAACTTCAGAAAATGGCACCGTTTCAGCCGTACAGCTTACCGTCGATTGCAAGCCCAATTTGCCACAGGAAGCGGAAAGAATCAAGA ACTCGAAGGGAAGAATATTCTGCCTGCCCGACGAGCCAGGAGTGTACAGAATATGGAGGCCGAGCGGCAAGACTCCAGGGCTGGCGTTATCCAGAGCGTT CGGCGACTACTGCATCAAGGAATTCGGCCTCATCTCGACGCCGGAAGTGACGCAGCTGAGAATCACCGACAGCGACCAGTTCGTGATCCTAGCGACGGAC GGAGTGTGGGATGTGGTCTCGAATCAGGAAGCGGTGAGGGTCGTTTCATCGGCGGCGGCGACGAATAGGGAGAAGTGTGCCAAGAGGCTTGTGGAGTTTG CTGCCAGAGCTTGGAAGCGTAAGAGGAACGGGATCGCCATGGATGACATGTCCGCCATTTGCTTGTTCTTCCATGGGATTGATGATGATGCTGCTGTTGA GACGTCGATGATTGTTTCAGCATCGGGTGGTCAAGATGATGATGATGCTGTGAAGAAAAATGGTTTGGCTTAA
AA sequence Show only first row Show all	>Lus10016831 pacid=23179066 polypeptide=Lus10016831 locus=Lus10016831.g ID=Lus10016831.BGIv1.0 annot-version=v1.0 MVLFPSFFNGLARTVSMKKGKPLEEKDCGKEAAEELAKDAKRNELILSSSGTVSKSNKFASVCSRRGQKGVNQDCLVVWEEFGCQEDMMLCGVFDGHGTW GHMVSKRVRETVPQFLLCNWQETLKASIDTEMELGLNDHHPHNHRHRFEIWKESYLKTYAAVDQQLKHHPKIDTFSSGSTALTIVKQGEHLMIANVGDSR AVLGTTSENGTVSAVQLTVDCKPNLPQEAERIKNSKGRIFCLPDEPGVYRIWRPSGKTPGLALSRAFGDYCIKEFGLISTPEVTQLRITDSDQFVILATD GVWDVVSNQEAVRVVSSAAATNREKCAKRLVEFAARAWKRKRNGIAMDDMSAICLFFHGIDDDAAVETSMIVSASGGQDDDDAVKKNGLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05640			Protein phosphatase 2C family ...		Lus10016831 [exp]	0	1
AT1G65770		AMR1	ascorbic acid mannose pathway ...		Lus10028385 [exp]	1.0	0.8280
AT4G08300			nodulin MtN21 /EamA-like trans...		Lus10022187 [exp]	3.0	0.7999
AT5G52660	MYB		Homeodomain-like superfamily p...		Lus10036392 [exp]	3.2	0.8018
AT1G76990		ACR3	ACT domain repeat 3 (.1.2.3.4....		Lus10018943 [exp]	3.7	0.6981
AT3G12320			unknown protein		Lus10024129 [exp]	4.9	0.7781
AT1G18390			Protein kinase superfamily pro...		Lus10016737 [exp]	6.0	0.7250
AT1G07350		SR45a	serine/arginine rich-like prot...		Lus10040705 [exp]	10.8	0.6537
AT3G54500			unknown protein		Lus10039553 [exp]	13.0	0.6999
AT1G36160		GSD1, PAS3, GK,...	PASTICCINO 3, GLOSSYHEAD 1, GU...		Lus10024747 [exp]	13.7	0.6886
AT3G12320			unknown protein		Lus10005384 [exp]	14.0	0.6991

Compare expression of checked genes

Lus10016831 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.