Plant FIBer expression Database

Lus10016832 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G16060 385 / 2e-135 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G006000
[exp]
422 / 1e-149 AT4G16060 380 / 3e-133 unknown protein
PFAM info
Representative CDS sequence
>Lus10016832 pacid=23179090 polypeptide=Lus10016832 locus=Lus10016832.g ID=Lus10016832.BGIv1.0 annot-version=v1.0
ATGACCACCGCTCTCGCTCCTCCTCGACCGTTCCTCAACCTTCCACCACAGTCTCTAAGTTTTCTCGAGCTTCCACGCCCATCTTCCATCGCATTATCTT
CCCATAACAGCTCGTCAACCTCTCCGCTTAGGTTCAATTGCGCTTCCGCCAATCGGATAACTCCCCGGCGACGATCGCAGACGATGTCCTCAGCAATCTC
CCAACCGGATTTCACTGAGCTCAGTGAGGAATCCGATTTCGATGAAATCGCAACTCCTTCTGGCCTGATCTCCATCTGCGGCTTCGGTTCTCTCCTCTCC
GAGAAGAGCGCGAGGAGCACGTTTCCGAACTTGATCAACTTCAGAGTAGCAAGATTGAACGGTTTCCGCCGCGTGTTTGCTCATGTCGCCCCCATTTTCT
TCGAGCGCGGTATAGCTAAGCCTGAGACCAAGGAAATCTCAAGCTTGAGTGTGGAGCCATGCGAAGGCGAAACTCTCATAGTAACAGTTTTCGAAATTGA
GAAGTCGGAGATTCCTGCTTTCATGGAGAGGGAGCTGGAGTTCCGATTTCTTGCTGTCGGGTCCGAAACTCTTGATGGCAAGCCTTTCAATGCACCAGCG
GTTCTTTGTGCTCGTTACACTGATGAGGAGTTCTTCCAAGTTAGATGCAAAGGAAGCAAAGATGTCTACTTTCAGCATTATGGACGGTATGACATCGATA
AGATATGGAGAGATGATATCTTGCCTTGCAGAGTCTATATGCGGCACTGTGTCTTGGCGGCAAAGAATCTCTGCGACGAAGCCTACGACAACTTCTTGGA
CCATACATTCTTAGGGGACCGCAGAACAACAATACGAGACTACCTGACAACAACAGGTGCTGGCATCATGGAAGAGGAACCCCCATTGTCTCTCAGAACA
CGATATGGTGGCTGA
AA sequence
>Lus10016832 pacid=23179090 polypeptide=Lus10016832 locus=Lus10016832.g ID=Lus10016832.BGIv1.0 annot-version=v1.0
MTTALAPPRPFLNLPPQSLSFLELPRPSSIALSSHNSSSTSPLRFNCASANRITPRRRSQTMSSAISQPDFTELSEESDFDEIATPSGLISICGFGSLLS
EKSARSTFPNLINFRVARLNGFRRVFAHVAPIFFERGIAKPETKEISSLSVEPCEGETLIVTVFEIEKSEIPAFMERELEFRFLAVGSETLDGKPFNAPA
VLCARYTDEEFFQVRCKGSKDVYFQHYGRYDIDKIWRDDILPCRVYMRHCVLAAKNLCDEAYDNFLDHTFLGDRRTTIRDYLTTTGAGIMEEEPPLSLRT
RYGG

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G16060 unknown protein Lus10016832
[exp]
0 1
AT4G32920 glycine-rich protein (.1.2.3) Lus10000229
[exp]
1.4 0.7665
AT5G02510 unknown protein Lus10024410
[exp]
4.9 0.7372
AT3G12685 Acid phosphatase/vanadium-depe... Lus10001841
[exp]
9.8 0.7109
AT5G57950 26S proteasome regulatory subu... Lus10022151
[exp]
10.0 0.6998
AT3G51970 ATASAT1, ASAT1,... ARABIDOPSIS THALIANA STEROL O-... Lus10039576
[exp]
14.0 0.6874
AT2G43950 OEP37, ATOEP37 ARABIDOPSIS CHLOROPLAST OUTER ... Lus10013621
[exp]
16.7 0.6564
Lus10016642
[exp]
21.2 0.6378
AT3G01680 SEOR1, SEOb Sieve-Element-Occlusion-Relate... Lus10017777
[exp]
24.2 0.6812
AT4G24440 transcription initiation facto... Lus10001864
[exp]
29.4 0.6328
AT2G28105 unknown protein Lus10016142
[exp]
30.3 0.6224

Lus10016832 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.