Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10530 527 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT5G65600 481 / 1e-162 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 302 / 2e-93 Concanavalin A-like lectin protein kinase family protein (.1) AT5G06740 287 / 3e-88 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 285 / 4e-87 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 283 / 3e-86 RLK receptor lectin kinase (.1) AT4G02420 282 / 5e-86 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 276 / 7e-84 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53380 269 / 1e-80 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 268 / 1e-80 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016836 [exp] 1032 / 0 AT3G16810 761 / 0.0 pumilio 24 (.1) Lus10029553 [exp] 659 / 0 AT5G10530 591 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029554 [exp] 634 / 0 AT5G10530 590 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004277 [exp] 543 / 0 AT5G10530 707 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029555 [exp] 533 / 0 AT5G10530 687 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004279 [exp] 471 / 3e-158 AT5G10530 578 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020456 [exp] 437 / 3e-145 AT5G10530 519 / 1e-176 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020446 [exp] 433 / 2e-143 AT5G10530 516 / 2e-175 Concanavalin A-like lectin protein kinase family protein (.1) Lus10007077 [exp] 420 / 1e-136 AT5G10530 511 / 4e-171 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G094700 [exp] 627 / 0 AT5G10530 764 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004500 [exp] 552 / 0 AT5G10530 725 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004300 [exp] 550 / 0 AT5G10530 743 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004400 [exp] 535 / 0 AT5G10530 738 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004200 [exp] 528 / 0 AT5G10530 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283700 [exp] 471 / 3e-158 AT5G10530 497 / 7e-168 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283208 [exp] 471 / 3e-158 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283866 [exp] 471 / 3e-158 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283212 [exp] 471 / 6e-158 AT5G10530 385 / 3e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283204 [exp] 459 / 1e-154 AT5G10530 472 / 3e-159 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10016833 pacid=23179126 polypeptide=Lus10016833 locus=Lus10016833.g ID=Lus10016833.BGIv1.0 annot-version=v1.0 ATGATCTTCGACGGAGGCGCTGCCAGATCCGATCCAGGAATCATCCGACTAACCAACGCCGAGCACTCCAATGAGGTCAGCCGAGTCACATACGCCGACA AAATCCCACTCTGGGATTCCGCCACCGGCAACCTCTCCGACTTCACCACCCATTTCTCTTTCTCCGTCGCCGCCAAAAACGAAGGAAGAGGAGGACAAAA ACTCAAACAACAACTCCCCTGCGGTATCTCCTTCTTCCTTGCACCCATCGGATTCCCCGTCCCGGCCAACTCCGCTGGTGGCTGGATGGGCCTCTACAAC TTCACCTACCGTGTCAATTCGCTGCCGAACCAAGTTGTCCACGTGGAGTTCGACTCCTTTGTCAATCCCGAGTGGGACCCTCCTTTCTACCATGTCGGCA TCAACAACAACTCCATCTCTTCCTCCGCGTTTTCTCCGTGGGAGATCGATTCCGATCGCCTCTCCGGGAATCATACGATCACCGTGGAAATCAGCTACAC GGCGAACACCCACAATCTCACCGTCTTTTGGACGAACGATTCGGCTTCGGATTCACTTTCCTATGTGATCGATCTACGGGAAGTTCTCCCGGAATGGGTT ATGGTAGGGTTTACAGCGACGACGAATCAAATTCAAGGGTATCAGGATCTTCTCTGGTGGGATTTCAGTTCCAATTTGGAGATGATGAGCGAAAGAGATA ATAACGATAACGGGAGAAAGATAACGACGCTGCTGCTAACGGCGATCCTCGCAGTTCCGTTAGGGTTCGCCGCAGCCGTGAAATTGATCGCGGTTGGTTT ATCCCGGAGACGGAAGAGCAAAGAAGAAATCGAAGGAGTGAGTTTGCTATCCATCAATCTGGAATTCTCAAAAGGCGCAGGTCCTAGATGGATTCCGTAC AAGGACCTCGTCTCTGCAACGAACGACTTCTCGACGAAATTAGGAGAAGGCGGATTCGGCGGGGTTTACAAAGGGGTTCTCAAGGGTTTACCAATTGCTG TCAAGAAATTCTCCAGACGTTCGTCGCAAGGGATCCAGGAATACATTACTGAAGTTAAAGTGATAAGTAGGTTAAGGCATCGGAATCTGGTTAAACTAGT TGGGTGGTGCCATGAGAGAGGTGAATTCGTGCTCGTTTACGAGTTCATGCCAAATGGCAGCCTTGATTCTCATCTCTTTGGTAATGTTGTTGTTCTCCAG TGGGTCGAAAGGTACAGAGTTGTAATGGGATTGGCTTCGGCTCTGCTGTACCTTCACGAAGAATGGGAGCAGTGTGTGGTTCATCGTGACATCAAGGCGG CTAATGTGATGCTGGACTCCGGGTTCAATGTCAAGCTCGGGGATTTCGGGCTGGCCAGAATGATTGATCATGAGCTAGGGGCTCAAACCACGAGGCTGGC TGGGACGATCGGGTACATGTCTCCGGAGTATATCGGAACGGGAAGGGCTAGCAAGGAGTCGGATGTGTATAGTTTCGGAGTGGTTTGTTTGGAGATTGCG ACGGGGAGGAGGGTTGTGGACTACATTGAGGAAGGGCTGGAGATGGGGTTGGTGGAATGGGTTTGGGAGCTCTATGGGAATGGGAATCATGGTGTGGCAA CTGATAGCCGGCTAGTTGATTTCGTCGAAAGGGAAATGGAGTGTTTGATGGTTGTAGGGTTGTGGTGTGCTCATCCTGATTGCTCGCAAAGAGCATCGAT CAGGCAAGCGATTCGAGTTCTGAAATTTGAAGCACCGTTCCCAAATCTTCCCGAGAAGAGGCCGTTCCCGGTGTTTCGTGTCCACGAGCCGTGTTCCAGT AGTAGTGGAAGTTCTGAACAGCCTTTGTTGTCGACAGTAGATTTGGATAGCAGATGA
AA sequence Show only first row Show all	>Lus10016833 pacid=23179126 polypeptide=Lus10016833 locus=Lus10016833.g ID=Lus10016833.BGIv1.0 annot-version=v1.0 MIFDGGAARSDPGIIRLTNAEHSNEVSRVTYADKIPLWDSATGNLSDFTTHFSFSVAAKNEGRGGQKLKQQLPCGISFFLAPIGFPVPANSAGGWMGLYN FTYRVNSLPNQVVHVEFDSFVNPEWDPPFYHVGINNNSISSSAFSPWEIDSDRLSGNHTITVEISYTANTHNLTVFWTNDSASDSLSYVIDLREVLPEWV MVGFTATTNQIQGYQDLLWWDFSSNLEMMSERDNNDNGRKITTLLLTAILAVPLGFAAAVKLIAVGLSRRRKSKEEIEGVSLLSINLEFSKGAGPRWIPY KDLVSATNDFSTKLGEGGFGGVYKGVLKGLPIAVKKFSRRSSQGIQEYITEVKVISRLRHRNLVKLVGWCHERGEFVLVYEFMPNGSLDSHLFGNVVVLQ WVERYRVVMGLASALLYLHEEWEQCVVHRDIKAANVMLDSGFNVKLGDFGLARMIDHELGAQTTRLAGTIGYMSPEYIGTGRASKESDVYSFGVVCLEIA TGRRVVDYIEEGLEMGLVEWVWELYGNGNHGVATDSRLVDFVEREMECLMVVGLWCAHPDCSQRASIRQAIRVLKFEAPFPNLPEKRPFPVFRVHEPCSS SSGSSEQPLLSTVDLDSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10530			Concanavalin A-like lectin pro...		Lus10016833 [exp]	0	1
AT5G25110		CIPK25, SnRK3.2...	SNF1-RELATED PROTEIN KINASE 3....		Lus10007448 [exp]	5.3	0.7876
AT3G02360			6-phosphogluconate dehydrogena...		Lus10003043 [exp]	5.9	0.8552
					Lus10018015 [exp]	8.9	0.8202
AT3G19450		CAD-C, ATCAD4	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10019811 [exp]	10.5	0.8278
AT5G55340			MBOAT (membrane bound O-acyl t...		Lus10022293 [exp]	12.0	0.8064
AT4G02040			unknown protein		Lus10019069 [exp]	14.1	0.8221
AT3G07270			GTP cyclohydrolase I (.1.2)		Lus10003152 [exp]	22.6	0.8032
AT5G41620			unknown protein		Lus10007858 [exp]	25.1	0.6872
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10016645 [exp]	26.0	0.8141
AT3G44110		ATJ3	DNAJ homologue 3 (.1.2)		Lus10013364 [exp]	28.5	0.7943

Compare expression of checked genes

Lus10016833 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.