Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16070 702 / 0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) AT3G14075 554 / 0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) AT2G42450 94 / 8e-20 alpha/beta-Hydrolases superfamily protein (.1) AT5G37710 66 / 3e-11 alpha/beta-Hydrolases superfamily protein (.1) AT3G49050 66 / 5e-11 alpha/beta-Hydrolases superfamily protein (.1) AT4G00500 65 / 8e-11 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G05790 60 / 5e-09 lipase class 3 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037710 [exp] 1036 / 0 AT4G16070 764 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Lus10015680 [exp] 571 / 0 AT3G14075 744 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Lus10008121 [exp] 563 / 0 AT3G14075 763 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Lus10013158 [exp] 563 / 0 AT3G14075 754 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Lus10024878 [exp] 104 / 3e-23 AT2G42450 618 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10000708 [exp] 100 / 1e-21 AT2G42450 610 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10037690 [exp] 72 / 7e-15 AT3G14075 137 / 4e-39 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Lus10030391 [exp] 69 / 3e-12 AT3G49050 571 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10037847 [exp] 69 / 4e-12 AT4G00500 636 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G211200 [exp] 769 / 0 AT4G16070 751 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Potri.010G005800 [exp] 753 / 0 AT4G16070 715 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Potri.003G067900 [exp] 570 / 0 AT3G14075 752 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Potri.005G222000 [exp] 105 / 2e-23 AT2G42450 643 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.015G145900 [exp] 68 / 8e-12 AT3G49050 631 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G159200 [exp] 68 / 9e-12 AT4G00500 619 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.012G142700 [exp] 68 / 1e-11 AT3G49050 654 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G083600 [exp] 63 / 4e-10 AT4G00500 629 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.017G130000 [exp] 61 / 1e-09 AT5G37710 609 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G086900 [exp] 61 / 2e-09 AT5G37710 599 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF03893 [flax] [poplar] Lipase3_N Lipase 3 N-terminal region CL0028 [flax] [poplar] AB_hydrolase PF01764 [flax] [poplar] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Lus10016834 pacid=23179073 polypeptide=Lus10016834 locus=Lus10016834.g ID=Lus10016834.BGIv1.0 annot-version=v1.0 ATGGCGGCGGGGGCAATGGCGACCGCCGCCTGGGGAGGGGGGGGTCCCTCCAATTTAAGCCGGAGACTTGCTTCTGCTGGCGGGGAAGAAGGGGATGCCG CTGATCTGAGTTTGTCGAAATCGAGATCCGGATTGCGGCGGGGGATTACGCCACGTCTGTTTGCCCCGCGGGGGCGGGGGGGGGGGGGGGGCGCGGCCCC CGCCGCCGGGGCAGCGGTGGTCCTCTACATTTTAAGCCGGAGACTTTCTTCCGCTGGCGAGGAAGAAGGGGATACCACTGATCGGAGTTTGTCGAAATCG AGATCCGGATTGCGGCGGAGGATTTCCCGGCGCCCGGCTCAAGCTCCGGCCACCTGGCTCGAGACCTTGACTACCTTAACCGAGACACTTCGGTTTACAT ACTCCGAAACTCTTGGGAAATGGCCGATCGCAGATTTGGCTTTCGGAATCAATTACCTCATCCGTAGGCAGGGTGATTTACAAGTATCCAGTATATATGC GGGCAGTGATTGTGTTCAGCTGAAAGGTCCTGAGATTGTGGCCGAGTTGAAGTACTTGCTCAGACTTCTGATCAATTGCATGTTCTTCTCCAAACGGCCA TTCCCAATTTTCTTAGAGTGTGCTGGTTACTCTCAACATCATGTCCTTTTACAGGAGCCTAAGGCAGGGATCCTGAAGCCTGCTTTTACCATTATTCGCG ATGAGGGCACCAAGCATTTCCTTTTGTTGATTAGAGGCACTCATAGCATCAAAGATACGTTGACTGCGGCTACTGGTGCTGTGGTTCCTTTCCACCATTC TGTTTTAGACGATGGTGGGATTAGTCACTTGGTGTTGGGATATGCGCATTGCGGAATGGTTGCCGCAGCACGTTGGATTGCTAAGCTCAGCTCTCCTTTC TTGCTAAAGGCTCTTGACGAATATCCTGAGTACAGAATTAAGGTAGTTGGCCATTCCCTTGGCGGTGGTACTGCAGCATTATTAACATACATACTGCGAG AGAAAAAGAGTTTTTCCTCTAGTACATGTGTGACATTCGCTCCAGCTGCGTGTATGACTTGGGATTTAGCAGAATCAGGCAAGAACTTCATCACTACAGT AATTAATGGATCCGATCTAGTCCCCACTTTTTCAACTGCTTCTATCGATGACCTCCGCTCCGAGGCGAGTGAATCTCATGTCACAGCTTCATCTTGGTTG AGTGATTTGAGAGATCAGGTTGAGCACACCAGGGTTCTAAACGTTGTTTATCGCTCCGCATCGGCCCTTGGATCTCGTCTACCATCCATAGCCAGTGCAA AAGCTAGGGTTGCTGGTGCTGGTGCACTCTTGCGCCCTGTTTCCAGCAGCACACAAGTTGTGATGAGACGAGCTCAGAACGTGGCGCAGGCTGTTGTGCA GACACGTACATCATTATCATCATGGTCATGCATCGGACCGCGTCGTCGGTCCGTTGGGCCATCATTAGCCCCTAAAGAACACGATTTGCACGAAACTTCA GTAGTATGTGAAAGCTCCGAGACCATTGTTACTGAAATCCACACCGAAGACTTGTCGCACGATCGGCCAGGCATTGATTCGAGCAGTGAAGAAGACGAGC CGCTTATTTCTAGGGAGGAAGTCCATGATTCGCCCGCCATGGAAGAAGACTCGACAGAAGGTGAGTTGTGGCACGAGCTGGCAAAGGAGCTCGAGAGACA CGAGAACGAAGTTGATATCCATGTCCAAGCGGAAGAAGCAGCAGTGGCGAAAGAGATCCAGGAAGAGGAGAGGATTCTGGTCGAAGCAGCAACCGATGCT GCAAGTCCCATCTCGGCTGAGGATGTCGTCGAGAGCCACAAGTTCTATCCTCCTGGCAAGATCATCCACATTGTATGTATACCTTCCTCCGAAGCTACTA CTGCTACTCCGGAGGTGGCTGAGGAGACTGCCGAAGAAGACAATGTTGGCATATATGAAACCCCGAGGGAGCTGTACAGTAAGATCCGTCTGTCGAAAAC GATGATAAACGATCATTACATGCCTATGTATAAGAAGATGATAGAATTGTTGATCAGGAAACTGGAAGAAGATGGTGAAGATTCTAGTAGGTGTATGATA TTAGAAGAACAAGCTTTGTAG
AA sequence Show only first row Show all	>Lus10016834 pacid=23179073 polypeptide=Lus10016834 locus=Lus10016834.g ID=Lus10016834.BGIv1.0 annot-version=v1.0 MAAGAMATAAWGGGGPSNLSRRLASAGGEEGDAADLSLSKSRSGLRRGITPRLFAPRGRGGGGGAAPAAGAAVVLYILSRRLSSAGEEEGDTTDRSLSKS RSGLRRRISRRPAQAPATWLETLTTLTETLRFTYSETLGKWPIADLAFGINYLIRRQGDLQVSSIYAGSDCVQLKGPEIVAELKYLLRLLINCMFFSKRP FPIFLECAGYSQHHVLLQEPKAGILKPAFTIIRDEGTKHFLLLIRGTHSIKDTLTAATGAVVPFHHSVLDDGGISHLVLGYAHCGMVAAARWIAKLSSPF LLKALDEYPEYRIKVVGHSLGGGTAALLTYILREKKSFSSSTCVTFAPAACMTWDLAESGKNFITTVINGSDLVPTFSTASIDDLRSEASESHVTASSWL SDLRDQVEHTRVLNVVYRSASALGSRLPSIASAKARVAGAGALLRPVSSSTQVVMRRAQNVAQAVVQTRTSLSSWSCIGPRRRSVGPSLAPKEHDLHETS VVCESSETIVTEIHTEDLSHDRPGIDSSSEEDEPLISREEVHDSPAMEEDSTEGELWHELAKELERHENEVDIHVQAEEAAVAKEIQEEERILVEAATDA ASPISAEDVVESHKFYPPGKIIHIVCIPSSEATTATPEVAEETAEEDNVGIYETPRELYSKIRLSKTMINDHYMPMYKKMIELLIRKLEEDGEDSSRCMI LEEQAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16070			Mono-/di-acylglycerol lipase, ...		Lus10016834 [exp]	0	1
AT1G52320			unknown protein		Lus10025777 [exp]	1.7	0.8817
AT1G48540			Outer arm dynein light chain 1...		Lus10017994 [exp]	8.0	0.8485
AT2G38610			RNA-binding KH domain-containi...		Lus10034443 [exp]	8.7	0.8641
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10031104 [exp]	9.8	0.8228
AT1G12360		KEU	keule, Sec1/munc18-like (SM) p...		Lus10032196 [exp]	10.2	0.8791
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Lus10013374 [exp]	11.0	0.8689
AT5G64620		ATC/VIF2, C/VIF...	cell wall / vacuolar inhibitor...		Lus10038738 [exp]	11.5	0.8694
AT1G22870			Protein kinase family protein ...		Lus10007901 [exp]	13.4	0.8269
AT5G40450			unknown protein		Lus10022266 [exp]	14.8	0.8249
AT1G06400		ARA2, AtRABA1a,...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10029789 [exp]	19.0	0.8404

Compare expression of checked genes

Lus10016834 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.