Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06778 140 / 3e-41 Chaperone DnaJ-domain superfamily protein (.1) AT4G19590 67 / 8e-13 Chaperone DnaJ-domain superfamily protein (.1) AT4G19570 62 / 7e-11 Chaperone DnaJ-domain superfamily protein (.1) AT2G01710 60 / 2e-10 Chaperone DnaJ-domain superfamily protein (.1) AT2G25560 60 / 4e-10 DNAJ heat shock N-terminal domain-containing protein (.1) AT3G04980 60 / 5e-10 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G18750 59 / 9e-10 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G37750 57 / 1e-09 Chaperone DnaJ-domain superfamily protein (.1) AT5G37440 56 / 4e-09 Chaperone DnaJ-domain superfamily protein (.1) AT5G53150 55 / 1e-08 DNAJ heat shock N-terminal domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037711 [exp] 395 / 6e-141 AT3G06778 149 / 2e-44 Chaperone DnaJ-domain superfamily protein (.1) Lus10015891 [exp] 67 / 1e-12 AT2G01710 310 / 2e-104 Chaperone DnaJ-domain superfamily protein (.1) Lus10028842 [exp] 65 / 1e-11 AT5G53150 498 / 3e-167 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10009275 [exp] 64 / 1e-11 AT2G01710 300 / 2e-100 Chaperone DnaJ-domain superfamily protein (.1) Lus10008983 [exp] 64 / 2e-11 AT5G53150 509 / 3e-172 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10001171 [exp] 61 / 1e-10 AT2G05250 308 / 2e-98 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10001744 [exp] 59 / 8e-10 AT2G05250 322 / 5e-103 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10027316 [exp] 57 / 3e-09 AT2G35540 383 / 1e-126 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10039019 [exp] 56 / 7e-09 AT2G35540 380 / 7e-126 DNAJ heat shock N-terminal domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G211300 [exp] 195 / 6e-62 AT3G06778 170 / 3e-52 Chaperone DnaJ-domain superfamily protein (.1) Potri.010G005700 [exp] 184 / 1e-57 AT3G06778 153 / 1e-45 Chaperone DnaJ-domain superfamily protein (.1) Potri.014G165600 [exp] 66 / 5e-12 AT2G05230 730 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.012G098800 [exp] 65 / 7e-12 AT5G53150 282 / 5e-84 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.008G196201 [exp] 64 / 2e-11 AT3G06340 249 / 6e-77 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Potri.010G018800 [exp] 62 / 7e-11 AT5G18750 446 / 3e-142 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.002G221000 [exp] 62 / 7e-11 AT2G05230 696 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.003G171200 [exp] 62 / 1e-10 AT5G53150 311 / 6e-95 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.012G001100 [exp] 61 / 1e-10 AT5G53150 570 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G097500 [exp] 61 / 2e-10 AT5G53150 487 / 4e-162 DNAJ heat shock N-terminal domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10016835 pacid=23179096 polypeptide=Lus10016835 locus=Lus10016835.g ID=Lus10016835.BGIv1.0 annot-version=v1.0 ATGGCTCCTGTCCTCACACTCTCACCATCTCTCCCTGGATTCTCCCCATTTCGTCGACTGGTGGATGAAGATGCAGATATAGACGTTATTCGAAGGCGGT ACCATAGGCTCGCTTTACAGCTTCATCCTGACAAGAACAGCCATCCTAGAGCTCATACAGCATTCAAGCTTGTCCTTCAGGCTTACTCGGTTCTCTCAGA TAATGTCAAGAGAAGAGCCTTTGATGTGGAGAGATGGAAACGCCTCTGCATTGATTGCAACAGAATCCCATTCTCCACCACCTTGCCGAAATCGAGCTCA TCTGAGAACCACCACTGCGATCCGAGATCCTTGAGGATTCGGCAGGCTCTGAGCGATATAAGAGAAAGGTTCAAGGAGGAAGCCAGAGTTATGGAGCATT GTCTCAAGCTTAATACCAATGGTAATGCTGCTGCAGCAAGGGAACTGCCAGTTTTCAGTCCATCTTCCTCCCCGTCGAACCGGTTGTTCCAACGGGACAG CTGCAGATTGAGAAGAGAATCGCCAGTCTTCAACCCGTCCGACTACGGTGTTGAAGGGTACCCTCACCTCAGGAGCCGGAGGGGATTCAATAAACCTGAG AATCTATGGAACCCGCAGAGGAAACAGACGTTTATTAGTCGTCAACATGGTCAGGGGTCAACAAGAACAGTCGCGTGTCCCATCTTTGAAAACAGGATAG ACAGAGGGATCCTGAATAGCGTCCATTCTTAG
AA sequence Show only first row Show all	>Lus10016835 pacid=23179096 polypeptide=Lus10016835 locus=Lus10016835.g ID=Lus10016835.BGIv1.0 annot-version=v1.0 MAPVLTLSPSLPGFSPFRRLVDEDADIDVIRRRYHRLALQLHPDKNSHPRAHTAFKLVLQAYSVLSDNVKRRAFDVERWKRLCIDCNRIPFSTTLPKSSS SENHHCDPRSLRIRQALSDIRERFKEEARVMEHCLKLNTNGNAAAARELPVFSPSSSPSNRLFQRDSCRLRRESPVFNPSDYGVEGYPHLRSRRGFNKPE NLWNPQRKQTFISRQHGQGSTRTVACPIFENRIDRGILNSVHS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06778			Chaperone DnaJ-domain superfam...		Lus10016835 [exp]	0	1
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10043201 [exp]	13.2	0.8255
AT4G17170		ATRAB-B1B, AT-R...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10025184 [exp]	15.4	0.7831
AT3G08980			Peptidase S24/S26A/S26B/S26C f...		Lus10002492 [exp]	15.8	0.7540
AT3G20740		FIE1, FIS3, FIE	FERTILIZATION-INDEPENDENT ENDO...		Lus10043071 [exp]	26.0	0.7282
AT5G02740			Ribosomal protein S24e family ...		Lus10015045 [exp]	30.3	0.7618
AT5G42240		SCPL42	serine carboxypeptidase-like 4...		Lus10018924 [exp]	33.0	0.7435
AT4G23440			Disease resistance protein (TI...		Lus10024639 [exp]	37.6	0.7535
AT5G14600			S-adenosyl-L-methionine-depend...		Lus10014554 [exp]	46.3	0.7421
AT3G02860	C2H2ZnF		zinc ion binding (.1.2)		Lus10037693 [exp]	54.8	0.7371
AT5G59180		NRPB7	DNA-directed RNA polymerase II...		Lus10004986 [exp]	57.5	0.7317

Compare expression of checked genes

Lus10016835 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.