Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16810 734 / 0 APUM24 pumilio 24 (.1) AT5G10530 522 / 2e-170 Concanavalin A-like lectin protein kinase family protein (.1) AT5G65600 489 / 1e-157 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 308 / 1e-90 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 292 / 4e-85 RLK receptor lectin kinase (.1) AT4G02420 288 / 2e-83 Concanavalin A-like lectin protein kinase family protein (.1) AT5G06740 286 / 6e-83 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 286 / 9e-83 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 283 / 6e-82 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 271 / 2e-77 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037712 [exp] 1253 / 0 AT3G16810 761 / 0.0 pumilio 24 (.1) Lus10016833 [exp] 1047 / 0 AT5G10530 575 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029553 [exp] 679 / 0 AT5G10530 591 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029554 [exp] 670 / 0 AT5G10530 590 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004277 [exp] 575 / 0 AT5G10530 707 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029555 [exp] 551 / 0 AT5G10530 687 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004279 [exp] 484 / 4e-155 AT5G10530 578 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020446 [exp] 441 / 1e-138 AT5G10530 516 / 2e-175 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020456 [exp] 428 / 3e-134 AT5G10530 519 / 1e-176 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G211400 [exp] 826 / 0 AT3G16810 722 / 0.0 pumilio 24 (.1) Potri.010G005600 [exp] 805 / 0 AT3G16810 728 / 0.0 pumilio 24 (.1) Potri.003G094700 [exp] 647 / 0 AT5G10530 764 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004300 [exp] 565 / 0 AT5G10530 743 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004500 [exp] 556 / 0 AT5G10530 725 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004400 [exp] 555 / 0 AT5G10530 738 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004200 [exp] 515 / 3e-167 AT5G10530 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283208 [exp] 475 / 7e-152 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283866 [exp] 475 / 7e-152 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283700 [exp] 466 / 2e-148 AT5G10530 497 / 7e-168 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10016836 pacid=23179114 polypeptide=Lus10016836 locus=Lus10016836.g ID=Lus10016836.BGIv1.0 annot-version=v1.0 ATGGCGGAGAACAAGGTAGACAGCAAAAGTTCGACGAAGAGAAAGCAATCTCCGGGGCACAAGGGTGGTAAAGATGGCACTGCAACCAAAAAGCCGAAGT TCGGTAGCTCAAATGCCAACGACAAGAAGGCGAAACAGCCTTTTAATCCAAAACAGGGGAAATCGAGTCATTCGGGAGCTGGTCAACAAACAACCCAGCC TCTATCCAAGCGAGACCTCCGTATCCAAGCTAAGGAGTTGGCTGATGCTAGGAAGATGAAGAGGAAGCGGCACTACAGTTTGGAGCAAGAGCTTGCTCGG CTGTGGGAGAAGATGAGGAAACGTAACATTGGCAAAGAAGAAAGATCCAAGTTAATCAGCGAAGCCATACAGAAGATGCAAGGGAAGATTCCCGAAATCG CTACTTCTCATGTTTCTTCCCGTGTTCTGCAGACGTGTGTGAAGTATTGCTCACAGACAGAAAGGGACGTTGTGTTTAGTGAGCTGCGACCTCATTTCTT GAACTTCGCTTGCAACCCATATGCGGTTCATCTCGTGAAGAAAATGTTAGATAGTGCTTCTAAGAAGCAGGTTGCAGATTTCATAGCCTCTCTTCGTGGC CATGTTGCTTCTCTTCTTCGCCACATGGTTGGATCAGTTGTCGTTGAACATGTATACCAAGCGGGTAATGCAAGTCAAAAACAAGAGCTTTTGCTCGAGT TGTATTCCACCGAGCTTCAGCTGTTCAAGGATCTTTCTTCAATCAAAGAGACGAGGTTGCTTGATGTGATCTCAAAGTTGAAGCTTCAGAAACCTGCTGT TTCGCGACATATGATTTCTGTGATTCAACCGATATTGGAGAAAGGAATTGTTGACCACTCTATCATACATAGGGTGATTACGGAGTACTTCTGCGTAGCT GATAAGTCCTCTGCAGCTGATATACTTCAGCAATTGTCTGGTGCACTTCTTGTTCGAATGATCCATACAAAGGATGGGTCTCGGATTGGTGTTCTTTGTG TGAAACATGGGAGTGCAAAGGAAAGAAAGAAAATTGTCAAAGGAATGAAAAGCCACATAGTGAAGATTGCACTAGATCAATGCGGTAGCGTGGTTCTCGC TTGCATTTTATCCACTGTGGATGATACAAAAATAATGACAAAGATTGTGGTTCGGGAGCTTCAATCTTGTTTGAAGGATCTCATTGTTGATAAGAATGGA AGGCGTCCGATATTGCAGCTACTTCACCCAAACTGTTCTCGCTATTTCAGCCCTGACGAACTTGCTTCTCTGAATTCATCTATTCCCTCTCTCAGTGCAA AGGCTGGGACTGAATCCAATACCAAAGTAAAAGTGAATGATGAAACAAAGATGGTAACAAATGAAGGATCTGCCGATGGGGAACATGACGTGGAAGATGA TACCATGGCTGAGGGAGATGAAACTGAAAATCTGGTTGAAGGTGGAAAGAAAGATGCCTTATCAAGAAGACGGGAATTATTGGTTGAAAGTGGACTTGCT GAGAACGTTATTGATGTATGCACTGAAAACGTTGAAGAGCTACTCAGGTCTAACTTTGGAAAGGAAGTCTTGTATGAGGTTGCAACTGGCGGTAACGAGG GCATTCTTCTCCCTTCACTCGGTGAGAAACTGACCACCTTGCATGAGGCAATAGCAACCGTTGCGGCAGAGTCTAAATATGAAGATGAAGAGAAGGAACA TGTGTTTGAAAACTTCCACGCAAGCCGAACCATCAGAAAGCTAGTCTTGGATGCCCCTGGTTTTGCAGCTATTCTGTGGAAGAAGGCTTTGAAAGGGAAG TGTAGCGTTTGGGCCAAAGGTCACAGTTCCAAGGTTATACACGCATTCTTGGACTCCACTGATGAGAAAGTCCGCAAACTCGCCGATTCAGAGCTGCAGC CACTAATCAAAGATGGCACCCTTAAAAGATCAGAAGACAAGAAGACGGGTAAAGAACGGACATTCACATTCTCCTCATACTGGCACACTGCTGCTACTGG AATGGCACCTCCTCTTCCGTACACACTTATTCTCCTCCTCCACCTCTGCATTTCCTCTTCCGCCGTCAAATTCCACAAACCAAGCTTCAACGATCCAAAC GACGACACTATAATCTTCGAAGGAGGCGCTGCCAGATCCGATCCAGGAATCATCCGACTAACCAACGCCCACCACCGCAACGAAGTCAGCCGAGTCACAT ACGCCGACAAGATCCCACTCTGGGATTCCGCCACCGGCAACCTCTCCGACTTCACCACCCACTTCTCCTTCTCCGTCGCCCCCAAAAAGTGGGCGAAACT CAAACAACTCCCCTGTGGAATCTCCTTCTTCCTTGCACCCTTCGGATTCCCCGTCCCGACCAACTCCGCCGGCGGCTACATGGGCCTCTACAACTTCACC TACCGAGTCTATTCCCCGGCGAACCAAGTCGTCCACGTGGAGTTCGACTCCTTCGTCAATCCAGCCTGGGACCCTCCTTTCTTCCACGTCGGCATCAACA ATAACTCCATCGCTTCCTCTGCCTTCTCTCCCTGGGAGATCGATTCCGATCCCCTCTCTGGGAATCATACGGTCACCGTGGAAATCAATTACACGGCAAG TACTCACAATCTCACCGTGTCTTGGATGAACGATTCGGCTTCGGATTCGCTTTCTTATGTGATCGATCTCCGTGAAGTTCTCCCCGAATGGGTCACGGTA GGGTTTACAGCGACGACGAATGAAATTCAAGGGAATCAGGATCTTCTCTGGTGGGATTTCAGTTCCAATCTGGAGATGAGCAAAAGAGATAGCGATAACG GGAGAAAGATAACGACGCTGCTGCTAACGGCGATCCTCGCAGTTCCGTTGGGCTTCGCCGTAGCTATAAAATTGATCGCGATCGGTCTATCCCGGAGAAG GATAAGCAAAGAAGAAAAAACGATCGGAGGAGTGAGTTTGCTATCCATCAATGTCGAATTCTCCAAAGGCGCAGGTCCTAGATGGATTCCGTACAAGGAT CTCGTCTCTGCAACGAATGAATTCACAATAAAATTAGGGGAGGGCGGTTTTGGCGGGGTTTACAAAGGGTTTCTCAAGGGTTTACCAGTTGCTGTCAAGA AATTCTCCAGACGTTCGTCGCAAGGGATCCAGGAGTACATTACTGAAGTTAAAGTGATCAGCAGGTTAAGGCATCGGAATCTGGTTAAACTAGTCGGGTG GTGCCACGATCGAGGTGAATTCTTGCTCGTTTACGAGTTCATGCCGAATGGCAGTCTTGATTCTCATCTCTTTGGAAATGGGAAGAATAATGTTGTTCTT CAGTGGGTCGAAAGGTACAGAGTTGTAATGGGATTGGCTTCGGCTCTGCTGTACCTTCATGAAGAGTGGGAGCAGTGTGTGGTTCATCGTGACATCAAGG CGGCTAATGTGATGCTTGATTCCGGGTTCAATGTCAAGCTCGGGGATTTCGGGCTGGCCAGAATGGTTGATCATGAGCTAGGGGCTCAAACCACGAGGCT GGCTGGGACGATCGGGTACATGTCTCCAGAGTATATCGGAACGGGAAGGGCTAGCAAGGAGTCGGATGTGTATAGTTTCGGAGTGGTTTGTTTGGAGATT GCGACGGGGAGGAGGGTTGTGGACTACATTGAGGAAGGGCTTGAAATGGGGTTGGTGGAATGGGTTTGGGAGCTGTATGGGAATGGGAACCATGGTGTGG CGATTGATAACAGACTTGGTGATAATTTCGAGGAAAGGGAAGTGGAGTGTTTGGTGGTTGTAGGCTTGTGGTGTGCTCATCCTGATTGCTCGCAGAGGGC GTCGATCAGGCAAGCGATTCGAGTTCTTAAATTCGAAGCACCATTCCCACGCCTTCCGGAGAAGAGGCCATTCCCGGTGTTTCGTGTGCATGAGCCGTGT TCAAGCAGTAGTGGAAGTTCTGAACAACCTTTGTTGTCGACAGTAGATTTGGATAGCAGATGA
AA sequence Show only first row Show all	>Lus10016836 pacid=23179114 polypeptide=Lus10016836 locus=Lus10016836.g ID=Lus10016836.BGIv1.0 annot-version=v1.0 MAENKVDSKSSTKRKQSPGHKGGKDGTATKKPKFGSSNANDKKAKQPFNPKQGKSSHSGAGQQTTQPLSKRDLRIQAKELADARKMKRKRHYSLEQELAR LWEKMRKRNIGKEERSKLISEAIQKMQGKIPEIATSHVSSRVLQTCVKYCSQTERDVVFSELRPHFLNFACNPYAVHLVKKMLDSASKKQVADFIASLRG HVASLLRHMVGSVVVEHVYQAGNASQKQELLLELYSTELQLFKDLSSIKETRLLDVISKLKLQKPAVSRHMISVIQPILEKGIVDHSIIHRVITEYFCVA DKSSAADILQQLSGALLVRMIHTKDGSRIGVLCVKHGSAKERKKIVKGMKSHIVKIALDQCGSVVLACILSTVDDTKIMTKIVVRELQSCLKDLIVDKNG RRPILQLLHPNCSRYFSPDELASLNSSIPSLSAKAGTESNTKVKVNDETKMVTNEGSADGEHDVEDDTMAEGDETENLVEGGKKDALSRRRELLVESGLA ENVIDVCTENVEELLRSNFGKEVLYEVATGGNEGILLPSLGEKLTTLHEAIATVAAESKYEDEEKEHVFENFHASRTIRKLVLDAPGFAAILWKKALKGK CSVWAKGHSSKVIHAFLDSTDEKVRKLADSELQPLIKDGTLKRSEDKKTGKERTFTFSSYWHTAATGMAPPLPYTLILLLHLCISSSAVKFHKPSFNDPN DDTIIFEGGAARSDPGIIRLTNAHHRNEVSRVTYADKIPLWDSATGNLSDFTTHFSFSVAPKKWAKLKQLPCGISFFLAPFGFPVPTNSAGGYMGLYNFT YRVYSPANQVVHVEFDSFVNPAWDPPFFHVGINNNSIASSAFSPWEIDSDPLSGNHTVTVEINYTASTHNLTVSWMNDSASDSLSYVIDLREVLPEWVTV GFTATTNEIQGNQDLLWWDFSSNLEMSKRDSDNGRKITTLLLTAILAVPLGFAVAIKLIAIGLSRRRISKEEKTIGGVSLLSINVEFSKGAGPRWIPYKD LVSATNEFTIKLGEGGFGGVYKGFLKGLPVAVKKFSRRSSQGIQEYITEVKVISRLRHRNLVKLVGWCHDRGEFLLVYEFMPNGSLDSHLFGNGKNNVVL QWVERYRVVMGLASALLYLHEEWEQCVVHRDIKAANVMLDSGFNVKLGDFGLARMVDHELGAQTTRLAGTIGYMSPEYIGTGRASKESDVYSFGVVCLEI ATGRRVVDYIEEGLEMGLVEWVWELYGNGNHGVAIDNRLGDNFEEREVECLVVVGLWCAHPDCSQRASIRQAIRVLKFEAPFPRLPEKRPFPVFRVHEPC SSSSGSSEQPLLSTVDLDSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16810		APUM24	pumilio 24 (.1)		Lus10016836 [exp]	0	1
AT3G16810		APUM24	pumilio 24 (.1)		Lus10037712 [exp]	1.0	0.9490
AT4G15640			unknown protein		Lus10012810 [exp]	5.5	0.8614
AT5G11240			transducin family protein / WD...		Lus10020907 [exp]	5.7	0.8810
AT2G44040			Dihydrodipicolinate reductase,...		Lus10041701 [exp]	6.6	0.8744
AT1G03110		TRM82, AtTRM82	tRNA modification 82, Transduc...		Lus10014680 [exp]	10.6	0.8610
AT1G52980		AtNug2	nuclear/nucleolar GTPase 2, GT...		Lus10021017 [exp]	11.6	0.8749
AT2G43650		EMB2777	EMBRYO DEFECTIVE 2777, Sas10/U...		Lus10012061 [exp]	12.1	0.8267
AT5G67240		SDN3	small RNA degrading nuclease 3...		Lus10011504 [exp]	13.4	0.8415
AT3G56990		EDA7	embryo sac development arrest ...		Lus10019107 [exp]	14.5	0.8382
AT4G35850			Pentatricopeptide repeat (PPR)...		Lus10003653 [exp]	18.2	0.7555

Compare expression of checked genes

Lus10016836 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.