Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24960 70 / 4e-14 unknown protein AT4G02210 69 / 1e-13 unknown protein AT5G05800 55 / 8e-09 unknown protein AT3G11290 41 / 0.0004 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034588 [exp] 100 / 2e-26 ND / Lus10010839 [exp] 91 / 4e-22 AT3G30200 47 / 9e-06 Plant transposase (Ptta/En/Spm family) (.1) Lus10008053 [exp] 87 / 7e-21 ND / Lus10004997 [exp] 72 / 1e-15 ND / Lus10005359 [exp] 67 / 6e-14 ND 41 / 1e-04 Lus10026250 [exp] 67 / 5e-13 AT2G24960 750 / 0.0 unknown protein Lus10032810 [exp] 65 / 8e-13 ND / Lus10013421 [exp] 64 / 5e-12 AT4G02210 418 / 1e-144 unknown protein Lus10010304 [exp] 62 / 2e-11 AT4G02210 395 / 1e-135 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G189300 [exp] 65 / 7e-13 AT5G05800 87 / 1e-19 unknown protein Potri.006G265900 [exp] 64 / 5e-12 AT2G24960 761 / 0.0 unknown protein Potri.001G339400 [exp] 63 / 9e-12 AT5G05800 107 / 6e-26 unknown protein Potri.010G019001 [exp] 61 / 9e-12 AT5G05800 94 / 7e-23 unknown protein Potri.008G074066 [exp] 62 / 2e-11 AT5G05800 92 / 1e-20 unknown protein Potri.006G116400 [exp] 62 / 3e-11 AT5G05800 97 / 3e-22 unknown protein Potri.007G118701 [exp] 61 / 3e-11 AT5G05800 109 / 6e-27 unknown protein Potri.004G127420 [exp] 60 / 6e-11 AT5G05800 91 / 8e-21 unknown protein Potri.014G061450 [exp] 60 / 8e-11 AT5G05800 111 / 2e-27 unknown protein Potri.005G163200 [exp] 60 / 9e-11 AT5G05800 103 / 5e-25 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016838 pacid=23179119 polypeptide=Lus10016838 locus=Lus10016838.g ID=Lus10016838.BGIv1.0 annot-version=v1.0 ATGGACAAAATTGATGATAATACTGAAGATTGTGTGGAGATTGATTCATCAAATGTATGGCATGAGCCTATAGAAACATATCTAATTGAACTAATGATTG AGGAAGTGAAGAAGGGTAATCGTACAACTATCACTTTTTCGAGGACTGGTTGGACGAATTTCATACAAGGATTGAAGGATGAGTTTCATAAAGAGTACAA TAAGGATCAATTGAAGAATAAGTATAATCAATTAAGGCATAAGCAAAAGAATTACAAGGCAATTATTTCTGATATAGGGAAGGGATACAATGCTGAAACC GGAAAGCTAACTGCACCAGATGATGTTTGGGAGAGATTGAGTGCGATCCATTACAGTGTCGTTGTTCCCTTCATCTCTCAACAAGCCTCTAATCTTAGGC ATCTCTTAGTCCACGAGGAGCGCATCCTCCACTATGAGCGACAAGGGGTTCATCGACGAGAAAGGTATGGTGATTCTCTGGATTTGACACTTCGTGATCT AGATCCGGACTACAAAGGAGAGCACTCTGGGAGAGTGATGACTAAGGGTAAATATGTTACCCCATCACAGGTTCGTAATTTCAACCTTTTCTGTTAG
AA sequence Show only first row Show all	>Lus10016838 pacid=23179119 polypeptide=Lus10016838 locus=Lus10016838.g ID=Lus10016838.BGIv1.0 annot-version=v1.0 MDKIDDNTEDCVEIDSSNVWHEPIETYLIELMIEEVKKGNRTTITFSRTGWTNFIQGLKDEFHKEYNKDQLKNKYNQLRHKQKNYKAIISDIGKGYNAET GKLTAPDDVWERLSAIHYSVVVPFISQQASNLRHLLVHEERILHYERQGVHRRERYGDSLDLTLRDLDPDYKGEHSGRVMTKGKYVTPSQVRNFNLFC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24960			unknown protein		Lus10016838 [exp]	0	1
AT4G10020		ATHSD5	hydroxysteroid dehydrogenase 5...		Lus10001280 [exp]	6.9	1.0000
					Lus10017803 [exp]	8.2	0.9632
AT1G12570			Glucose-methanol-choline (GMC)...		Lus10002957 [exp]	10.5	1.0000
AT3G20760			Nse4, component of Smc5/6 DNA ...		Lus10004185 [exp]	12.8	1.0000
AT4G01830		ABCB5, PGP5	ATP-binding cassette B5, P-gly...		Lus10004529 [exp]	14.6	1.0000
					Lus10010609 [exp]	15.0	1.0000
AT5G46795		MSP2	microspore-specific promoter ...		Lus10004566 [exp]	15.2	1.0000
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10010756 [exp]	16.7	1.0000
					Lus10009800 [exp]	18.2	1.0000
					Lus10011061 [exp]	18.4	1.0000

Compare expression of checked genes

Lus10016838 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.