Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016840 [exp] 120 / 4e-35 AT1G24020 58 / 5e-11 MLP-like protein 423 (.1.2) Lus10037715 [exp] 115 / 5e-33 AT1G24020 54 / 2e-09 MLP-like protein 423 (.1.2) Lus10014508 [exp] 81 / 1e-19 ND / Lus10032178 [exp] 79 / 4e-19 ND / Lus10005608 [exp] 78 / 1e-18 ND / Lus10003187 [exp] 77 / 4e-18 AT5G45860 46 / 1e-06 regulatory components of ABA receptor 5, PYR1-like 11 (.1) Lus10039454 [exp] 74 / 8e-17 AT1G24020 43 / 1e-05 MLP-like protein 423 (.1.2) Lus10015339 [exp] 72 / 2e-16 ND 41 / 6e-05 Lus10030840 [exp] 44 / 1e-05 AT1G24020 189 / 2e-62 MLP-like protein 423 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G212100 [exp] 159 / 1e-50 AT1G24020 50 / 6e-08 MLP-like protein 423 (.1.2) Potri.010G000400 [exp] 112 / 3e-32 AT1G24020 66 / 4e-14 MLP-like protein 423 (.1.2) Potri.010G000200 [exp] 110 / 3e-31 AT1G24020 65 / 1e-13 MLP-like protein 423 (.1.2) Potri.010G000600 [exp] 97 / 6e-26 AT1G24020 67 / 1e-14 MLP-like protein 423 (.1.2) Potri.008G212300 [exp] 89 / 5e-23 AT1G24020 47 / 5e-07 MLP-like protein 423 (.1.2) Potri.008G212700 [exp] 81 / 7e-20 AT1G24020 68 / 8e-15 MLP-like protein 423 (.1.2) Potri.008G213446 [exp] 81 / 7e-20 AT1G24020 68 / 8e-15 MLP-like protein 423 (.1.2) Potri.008G213669 [exp] 81 / 7e-20 AT1G24020 68 / 8e-15 MLP-like protein 423 (.1.2) Potri.004G021100 [exp] 79 / 7e-19 AT1G24020 53 / 4e-09 MLP-like protein 423 (.1.2) Potri.004G033000 [exp] 79 / 8e-19 AT1G24020 57 / 1e-10 MLP-like protein 423 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF00407 [flax] [poplar] Bet_v_1 Pathogenesis-related protein Bet v 1 family
Representative CDS sequence Show only first row Show all	>Lus10016839 pacid=23179081 polypeptide=Lus10016839 locus=Lus10016839.g ID=Lus10016839.BGIv1.0 annot-version=v1.0 ATGGGTGCCACAACAACCTTCACCAAACAATATGTTTCGCCAATCTCTCCGTCAAGGATGTTCAAAGCCCTGATCGTGGATTCGAGCAACTTGATCCCGA AGCTCCTGCCTCAATTCATTGAAAGTATCGGTGTGACCCGCGACATACAGGATGGTTGTGATAAGACTATAGAGCAAGTCAACTTCACCAAAGCTTCTAA CATGAGATGTGTGAAGAACCGGATCGATGAGCTCGACGAGGAGGGTCTTGTATGCAAGTACACAATGGTCGAGGGGGAACCTCTTGGCGAAAAGATCGAA TCGATTGCTTACGAGGTGAAGTTTGCTAAGAATGGTGAAGGAGAAGGGTGTGTTTGCACTGTGACGAGCCATTACAATGCTGTGGGAGAGTATGCTATTG AAGAAGAAGAGATTGAGGAAGGAAGGGAGAAAGCCATGGAGATATTTGGAGTTGTAGAAGCCTACCTCTCCCATAACCCACATCTTTACAACTAG
AA sequence Show only first row Show all	>Lus10016839 pacid=23179081 polypeptide=Lus10016839 locus=Lus10016839.g ID=Lus10016839.BGIv1.0 annot-version=v1.0 MGATTTFTKQYVSPISPSRMFKALIVDSSNLIPKLLPQFIESIGVTRDIQDGCDKTIEQVNFTKASNMRCVKNRIDELDEEGLVCKYTMVEGEPLGEKIE SIAYEVKFAKNGEGEGCVCTVTSHYNAVGEYAIEEEEIEEGREKAMEIFGVVEAYLSHNPHLYN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10016839 [exp]	0	1
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10016995 [exp]	1.0	0.9866
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10021318 [exp]	2.8	0.9786
AT4G35030			Protein kinase superfamily pro...		Lus10017273 [exp]	3.2	0.9748
AT5G44440			FAD-binding Berberine family p...		Lus10012641 [exp]	6.2	0.9721
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10004908 [exp]	6.5	0.9761
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10013595 [exp]	8.8	0.9830
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10004907 [exp]	11.5	0.9744
AT1G13110		CYP71B7	"cytochrome P450, family 71 su...		Lus10029035 [exp]	12.8	0.9803
AT5G01750			Protein of unknown function (D...		Lus10025253 [exp]	14.5	0.9738
AT5G10530			Concanavalin A-like lectin pro...		Lus10033781 [exp]	15.0	0.9656

Compare expression of checked genes

Lus10016839 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.