Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24020 58 / 6e-11 MLP423 MLP-like protein 423 (.1.2) AT5G45860 45 / 2e-06 RCAR5, PYL11 regulatory components of ABA receptor 5, PYR1-like 11 (.1) AT2G26040 45 / 3e-06 RCAR14, PYL2 regulatory components of ABA receptor 14, PYR1-like 2 (.1) AT5G05440 44 / 7e-06 RCAR8, PYL5 regulatory component of ABA receptor 8, PYRABACTIN RESISTANCE 1-LIKE 5, Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT2G38310 44 / 7e-06 RCAR10, PYL4 regulatory components of ABA receptor 10, PYR1-like 4 (.1) AT2G40330 41 / 0.0001 RCAR9, PYL6 regulatory components of ABA receptor 9, PYR1-like 6 (.1) AT5G45870 40 / 0.0002 RCAR6, PYL12 regulatory components of ABA receptor 6, PYR1-like 12 (.1) AT1G70890 39 / 0.0005 MLP43 MLP-like protein 43 (.1) AT1G70850 39 / 0.0008 MLP34 MLP-like protein 34 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037715 [exp] 305 / 4e-108 AT1G24020 54 / 2e-09 MLP-like protein 423 (.1.2) Lus10016839 [exp] 128 / 3e-38 ND / Lus10003187 [exp] 100 / 3e-27 AT5G45860 46 / 1e-06 regulatory components of ABA receptor 5, PYR1-like 11 (.1) Lus10014508 [exp] 99 / 7e-27 ND / Lus10005608 [exp] 95 / 5e-25 ND / Lus10032178 [exp] 92 / 5e-24 ND / Lus10015339 [exp] 86 / 1e-21 ND 41 / 6e-05 Lus10039454 [exp] 84 / 4e-21 AT1G24020 43 / 1e-05 MLP-like protein 423 (.1.2) Lus10030840 [exp] 67 / 3e-14 AT1G24020 189 / 2e-62 MLP-like protein 423 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G000400 [exp] 177 / 8e-58 AT1G24020 66 / 4e-14 MLP-like protein 423 (.1.2) Potri.010G000200 [exp] 172 / 7e-56 AT1G24020 65 / 1e-13 MLP-like protein 423 (.1.2) Potri.008G212100 [exp] 172 / 1e-55 AT1G24020 50 / 6e-08 MLP-like protein 423 (.1.2) Potri.010G000600 [exp] 139 / 7e-43 AT1G24020 67 / 1e-14 MLP-like protein 423 (.1.2) Potri.014G152800 [exp] 132 / 6e-40 AT1G24020 54 / 1e-09 MLP-like protein 423 (.1.2) Potri.011G025966 [exp] 131 / 2e-39 AT1G24020 55 / 7e-10 MLP-like protein 423 (.1.2) Potri.011G025900 [exp] 131 / 2e-39 AT1G24020 55 / 7e-10 MLP-like protein 423 (.1.2) Potri.011G026100 [exp] 130 / 3e-39 AT1G24020 54 / 2e-09 MLP-like protein 423 (.1.2) Potri.008G212700 [exp] 130 / 5e-39 AT1G24020 68 / 8e-15 MLP-like protein 423 (.1.2) Potri.008G213446 [exp] 130 / 5e-39 AT1G24020 68 / 8e-15 MLP-like protein 423 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF00407 [flax] [poplar] Bet_v_1 Pathogenesis-related protein Bet v 1 family
Representative CDS sequence Show only first row Show all	>Lus10016840 pacid=23179115 polypeptide=Lus10016840 locus=Lus10016840.g ID=Lus10016840.BGIv1.0 annot-version=v1.0 ATGGGTGTGCACACATACTCAGAGGACAGCGTTTCACCAGTGGCTCCGTCAAGGCTTTACAAGGCCCTCATTGGTGACTCTCAAAACCTCATCCCTAAAC TCCTCCCTCAGGTCATCAAGTCCATCTCACTCCTCGAAGGCGACGGCGGGGTCGGTTCCATCAGGGTCATCGCTTTCCAAGAAGGATTGCCGATGAAGAA TCTGAAGACAAAGATCGATGCGATGGACGAGGAAAAGATGAGTTACAAATACACCCTGGTGGAAGGGGACCAGCTGACCGAGAAAATAGAGAGCATATCG TACGAGGTTGAGTTTGCGGCTGGACCGGACGGCGGATCCATCGGCAAAATGAAGGCGACTTACGTGACAAAGGGGGACGAAGCGCCGACGGAGGAGGAGA TCAATCAAGGCAAACAAACTTCGACGTCCATGTACAAGGTTGTCGAAGACTACCTCCAGCAAAACCCAGATGCCTACGTTTGA
AA sequence Show only first row Show all	>Lus10016840 pacid=23179115 polypeptide=Lus10016840 locus=Lus10016840.g ID=Lus10016840.BGIv1.0 annot-version=v1.0 MGVHTYSEDSVSPVAPSRLYKALIGDSQNLIPKLLPQVIKSISLLEGDGGVGSIRVIAFQEGLPMKNLKTKIDAMDEEKMSYKYTLVEGDQLTEKIESIS YEVEFAAGPDGGSIGKMKATYVTKGDEAPTEEEINQGKQTSTSMYKVVEDYLQQNPDAYV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10016840 [exp]	0	1
AT1G21430		YUC11	Flavin-binding monooxygenase f...		Lus10000677 [exp]	5.4	1.0000
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10016225 [exp]	6.9	0.9631
AT2G15220			Plant basic secretory protein ...		Lus10001608 [exp]	7.6	1.0000
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10005144 [exp]	9.3	1.0000
					Lus10024141 [exp]	10.8	1.0000
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10027988 [exp]	12.0	1.0000
					Lus10013255 [exp]	13.2	1.0000
					Lus10013259 [exp]	14.2	1.0000
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10013964 [exp]	15.2	1.0000
AT3G06240			F-box family protein (.1)		Lus10014136 [exp]	16.2	1.0000

Compare expression of checked genes

Lus10016840 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.