Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16100 301 / 4e-99 Protein of unknown function (DUF789) (.1) AT5G49220 281 / 5e-91 Protein of unknown function (DUF789) (.1) AT1G15030 266 / 6e-86 Protein of unknown function (DUF789) (.1) AT2G01260 252 / 3e-80 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) AT1G03610 207 / 1e-63 Protein of unknown function (DUF789) (.1) AT4G03420 195 / 5e-59 Protein of unknown function (DUF789) (.1) AT4G28150 175 / 1e-51 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) AT1G73210 170 / 3e-49 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) AT1G17830 166 / 2e-47 Protein of unknown function (DUF789) (.1) AT5G23380 120 / 8e-31 Protein of unknown function (DUF789) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037716 [exp] 757 / 0 AT4G16100 311 / 4e-103 Protein of unknown function (DUF789) (.1) Lus10037717 [exp] 660 / 0 AT4G16100 321 / 2e-103 Protein of unknown function (DUF789) (.1) Lus10016842 [exp] 497 / 2e-176 AT4G16100 272 / 8e-89 Protein of unknown function (DUF789) (.1) Lus10018572 [exp] 194 / 2e-58 AT4G03420 405 / 1e-142 Protein of unknown function (DUF789) (.1) Lus10031632 [exp] 173 / 8e-51 AT4G03420 345 / 2e-119 Protein of unknown function (DUF789) (.1) Lus10038327 [exp] 172 / 1e-49 AT1G73210 319 / 1e-108 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) Lus10036189 [exp] 158 / 7e-44 AT1G73210 298 / 2e-99 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) Lus10033707 [exp] 155 / 1e-43 AT4G03420 359 / 2e-124 Protein of unknown function (DUF789) (.1) Lus10039803 [exp] 135 / 2e-36 AT1G03610 303 / 2e-103 Protein of unknown function (DUF789) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G000700 [exp] 490 / 7e-173 AT5G49220 342 / 3e-115 Protein of unknown function (DUF789) (.1) Potri.008G213300 [exp] 483 / 5e-170 AT5G49220 338 / 2e-113 Protein of unknown function (DUF789) (.1) Potri.008G124000 [exp] 290 / 9e-95 AT2G01260 384 / 1e-132 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) Potri.010G120700 [exp] 281 / 2e-91 AT2G01260 367 / 1e-125 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) Potri.013G144000 [exp] 212 / 3e-65 AT4G03420 414 / 2e-146 Protein of unknown function (DUF789) (.1) Potri.019G103000 [exp] 196 / 7e-59 AT4G03420 427 / 2e-151 Protein of unknown function (DUF789) (.1) Potri.018G152500 [exp] 187 / 2e-55 AT1G17830 321 / 3e-109 Protein of unknown function (DUF789) (.1) Potri.017G155200 [exp] 182 / 1e-53 AT1G17830 328 / 9e-112 Protein of unknown function (DUF789) (.1) Potri.004G068700 [exp] 88 / 2e-18 AT1G73210 100 / 2e-22 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) Potri.017G152601 [exp] 84 / 4e-17 AT1G03610 95 / 9e-21 Protein of unknown function (DUF789) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05623 [flax] [poplar] DUF789 Protein of unknown function (DUF789)
Representative CDS sequence Show only first row Show all	>Lus10016841 pacid=23179026 polypeptide=Lus10016841 locus=Lus10016841.g ID=Lus10016841.BGIv1.0 annot-version=v1.0 ATGTCGGGCTCCGGTGGCGTGAAAGTTTCCAGAGCTCGCGGAGATGCCCGATTCTATGTTTCCCCAGGCATGCGCAAGCCTCAGGAGCAGCAGCAGCAGC AACGGAGCAAGCAGCAGCGCAATGGCAGCCACCAGAAACAGCAGCAGAAGCAGACAACGATGAATGGTTCTGCGACTGATATCGATAAAAGGGCCGACGC CGATCAATGCCGTTCGTCCTCCTCTTCCTCCACCGCCTCTAATTGTTCCGCCGTCCCCGATCGGCCGATTCCGCAAGGTGTCTACAGCAATTTGGATCGG TTCTTGGCGTACACCACTCCATCTGTCCCTTCCCAGTTCTTACCAAAGACTAGCCTGAAAGAATGGAGGCGTGGCGACCTGCACCAACACCCCTACTTTG TTTTGGGTGATTTGTGGGAGTCTTTCCGGGAATGGAGTGCATTTGGTGTTGGTGTTCCCCTCCTTTTGAATGGCAGCGAGGCAGTAATCCAGTACTATGT TCCTTACCTCTCTGCCATTCAATTGTATAAGGATCCGTCAAAACAATCCACCAGGCTAAGGCGGACTGGTGAGGATAGTGATACAGAATCATCTAGGGAA ACAAATAGTAATGGTAGCAGTGAGTTTGGAACAGACGGAGGCACAAATAATGGTGCAAGTGGGCTATGGAGCCAGCAAAATGGTATCGTTTCTAGCATTC CAAGTCTTAATGGACTTACTTTGAGACATAAGACGTCTAGGGGATCATCTGGTGATGAATGTGAAAGTTCTAGCCCCCCTGTTGAACTTGTGTTTGAGTA TATGGAGCGTGCCTCACCTTTTACTCGTCAGCCATTGGCAGAGCAGATTTCAGATCTTGCTTCTCAGTTTCCAGAACTTCGAACATTCAAGAGCTGTGAA CTTTCTGATTCAAGTTGGATGTCTGTGGCCTGGTACCCAATCTACAGGATACCTGTGGGTCAAACGCTACAAAATCTGGATGCCTGCTTTTTGACTTTCC ATTCTCTGTCAACGCCCTTAACCCGAGAAGGTCAAAACACAGATGGATTTCAACTTCCCAGCTCCAACATTAAGGAGGTTCAATGTGCCGACACTTGGAA GCTACTTTTATATAGCTTTGGTCTCGCCTCGTATAAGTTGAAGGTCTCATTCTGGGACCCAAATGGAAGTCAAGACTGTCAGAAAGGAAGCTCACTTCTT CGAGCTGCTGATACCTGGCTAAGGCTATTGGAAGTGAATCATCCAGATTATAGCTTCTTCATTTCGCACAACTCGGGTTGGAGGTGA
AA sequence Show only first row Show all	>Lus10016841 pacid=23179026 polypeptide=Lus10016841 locus=Lus10016841.g ID=Lus10016841.BGIv1.0 annot-version=v1.0 MSGSGGVKVSRARGDARFYVSPGMRKPQEQQQQQRSKQQRNGSHQKQQQKQTTMNGSATDIDKRADADQCRSSSSSSTASNCSAVPDRPIPQGVYSNLDR FLAYTTPSVPSQFLPKTSLKEWRRGDLHQHPYFVLGDLWESFREWSAFGVGVPLLLNGSEAVIQYYVPYLSAIQLYKDPSKQSTRLRRTGEDSDTESSRE TNSNGSSEFGTDGGTNNGASGLWSQQNGIVSSIPSLNGLTLRHKTSRGSSGDECESSSPPVELVFEYMERASPFTRQPLAEQISDLASQFPELRTFKSCE LSDSSWMSVAWYPIYRIPVGQTLQNLDACFLTFHSLSTPLTREGQNTDGFQLPSSNIKEVQCADTWKLLLYSFGLASYKLKVSFWDPNGSQDCQKGSSLL RAADTWLRLLEVNHPDYSFFISHNSGWR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16100			Protein of unknown function (D...		Lus10016841 [exp]	0	1
AT2G29190		APUM2	pumilio 2 (.1.2)		Lus10016513 [exp]	2.2	0.8364
AT4G12640			RNA recognition motif (RRM)-co...		Lus10016070 [exp]	4.0	0.8153
AT3G32940			RNA-binding KH domain-containi...		Lus10039188 [exp]	6.0	0.8063
AT5G42920		AtTHO5	THO complex, subunit 5 (.1.2)		Lus10009754 [exp]	9.5	0.8170
AT5G56930	C3HZnF	EMB1789	embryo defective 1789, CCCH-ty...		Lus10028950 [exp]	12.1	0.8269
AT1G08260		ESD7, EMB142, E...	TILTED 1, EARLY IN SHORT DAYS ...		Lus10006269 [exp]	13.0	0.7893
AT3G23900			RNA recognition motif (RRM)-co...		Lus10043159 [exp]	13.6	0.8131
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10036017 [exp]	13.7	0.7938
AT4G16100			Protein of unknown function (D...		Lus10037716 [exp]	15.9	0.6948
AT5G54910			DEA(D/H)-box RNA helicase fami...		Lus10012172 [exp]	17.0	0.7692

Compare expression of checked genes

Lus10016841 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.