Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16100 229 / 4e-72 Protein of unknown function (DUF789) (.1) AT5G49220 202 / 2e-61 Protein of unknown function (DUF789) (.1) AT1G15030 201 / 2e-61 Protein of unknown function (DUF789) (.1) AT2G01260 197 / 1e-59 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) AT1G17830 129 / 2e-34 Protein of unknown function (DUF789) (.1) AT1G03610 97 / 7e-23 Protein of unknown function (DUF789) (.1) AT4G03420 95 / 6e-22 Protein of unknown function (DUF789) (.1) AT4G28150 87 / 3e-19 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) AT1G73210 79 / 2e-16 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) AT5G23380 60 / 7e-10 Protein of unknown function (DUF789) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037717 [exp] 484 / 2e-167 AT4G16100 321 / 2e-103 Protein of unknown function (DUF789) (.1) Lus10037716 [exp] 410 / 3e-142 AT4G16100 311 / 4e-103 Protein of unknown function (DUF789) (.1) Lus10016841 [exp] 389 / 7e-134 AT4G16100 310 / 2e-102 Protein of unknown function (DUF789) (.1) Lus10039803 [exp] 96 / 1e-22 AT1G03610 303 / 2e-103 Protein of unknown function (DUF789) (.1) Lus10018572 [exp] 97 / 2e-22 AT4G03420 405 / 1e-142 Protein of unknown function (DUF789) (.1) Lus10031632 [exp] 93 / 3e-21 AT4G03420 345 / 2e-119 Protein of unknown function (DUF789) (.1) Lus10033707 [exp] 92 / 7e-21 AT4G03420 359 / 2e-124 Protein of unknown function (DUF789) (.1) Lus10038327 [exp] 87 / 8e-19 AT1G73210 319 / 1e-108 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) Lus10036189 [exp] 84 / 9e-18 AT1G73210 298 / 2e-99 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G000700 [exp] 294 / 5e-97 AT5G49220 342 / 3e-115 Protein of unknown function (DUF789) (.1) Potri.008G213300 [exp] 291 / 5e-96 AT5G49220 338 / 2e-113 Protein of unknown function (DUF789) (.1) Potri.008G124000 [exp] 230 / 3e-72 AT2G01260 384 / 1e-132 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) Potri.017G155200 [exp] 129 / 2e-34 AT1G17830 328 / 9e-112 Protein of unknown function (DUF789) (.1) Potri.010G120700 [exp] 127 / 4e-33 AT2G01260 367 / 1e-125 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) Potri.013G144000 [exp] 97 / 1e-22 AT4G03420 414 / 2e-146 Protein of unknown function (DUF789) (.1) Potri.019G103000 [exp] 95 / 7e-22 AT4G03420 427 / 2e-151 Protein of unknown function (DUF789) (.1) Potri.018G152500 [exp] 87 / 4e-19 AT1G17830 321 / 3e-109 Protein of unknown function (DUF789) (.1) Potri.017G152601 [exp] 77 / 5e-15 AT1G03610 95 / 9e-21 Protein of unknown function (DUF789) (.1) Potri.019G119100 [exp] 66 / 1e-11 AT2G01260 84 / 1e-17 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05623 [flax] [poplar] DUF789 Protein of unknown function (DUF789)
Representative CDS sequence Show only first row Show all	>Lus10016842 pacid=23179097 polypeptide=Lus10016842 locus=Lus10016842.g ID=Lus10016842.BGIv1.0 annot-version=v1.0 ATGTCGGGCTCTAGTGGGTCTACAAGTTCCAGAGCCCGCGGAGAAGGCCGATTCTATGTTCCCCCCGGCATACGCAAGCCTCAGGAGCAGCAGCAACGGA GCAAGCAGCAGCCCCGTAATAGCAGCCATCAGAGACAGCAGCAAAAGCAGACTCCAATCAATGGTTCTGTGCCTGAGATCGATAAGAGGGCTGACGCTGA TCAATGCCGTTCGTCTTCCTCTTCCTCCACCGTTTCCAATTGTTCGGCTGGCCCCGATCGGCCGATTCCGCCAAGTGACTGCAGCAATTTGGAACGGTTT TTGAAGTACACCACTCCTGCTGTCCCTGCCCAACACGTCTCAAAGACTAGTGTGAAAGAATGGAGGCGTGGTGGAGAGCTGCATCAACCCTACTTTGTTT TGGGTGATTTATGGGAGTCTTTCGGGGAGTGGAGTGCATTTGGTGTTGGTGTTCCCCTCCTTTTGAATGGAACTGAAGCTGTAATCCAGTACTATGTTCC GTACCTCTCTGGCATCCAATTATATAAGGATCCGTCAAAACAATCCACCAGGCCAAGGCGGACTGGTGAGGACAGTGATACAGAATCATCTAGGGAAACA AGTAGTGATGGTAGCAGTGAGTTTGGAACAGACGGAGGCACAAATAATGGTGCAGGTGGACTATGGAGCCAGCAAAATGGTAACATTGCTATTATTCCAA GTCTGAATGGACTTACTTTGAGACATAAGCCGCCCAGGGGATCATCTAGTGATGAATGTGAAAGTTCCAGTCCCCGTGGTCAACTTGTGTTTGAGTATAT GGAGAGTGCCTCACCTTTCACTCGTCAGCCATTGGCAGAGCAGATTTCAGATCTTGCTTCTCAGTTTCCAGAACTTCAAACATTCAAGAGCTGTGAACTT TCTGATTCAAGTTGGATGTCTGTGGCCTGGTACCCAATCTATAGGATACCTGTGGGCCAAACACTACAAAATCTGGATGCCTGCTTTTTGACTTTCCATT CTCTGTCAACGATCTCAACCACAGAAGGTATGAAGACGGTCAGAAAGCAAGCTCACTTCAACGAGCTGCTGAAACCTGGCTAA
AA sequence Show only first row Show all	>Lus10016842 pacid=23179097 polypeptide=Lus10016842 locus=Lus10016842.g ID=Lus10016842.BGIv1.0 annot-version=v1.0 MSGSSGSTSSRARGEGRFYVPPGIRKPQEQQQRSKQQPRNSSHQRQQQKQTPINGSVPEIDKRADADQCRSSSSSSTVSNCSAGPDRPIPPSDCSNLERF LKYTTPAVPAQHVSKTSVKEWRRGGELHQPYFVLGDLWESFGEWSAFGVGVPLLLNGTEAVIQYYVPYLSGIQLYKDPSKQSTRPRRTGEDSDTESSRET SSDGSSEFGTDGGTNNGAGGLWSQQNGNIAIIPSLNGLTLRHKPPRGSSSDECESSSPRGQLVFEYMESASPFTRQPLAEQISDLASQFPELQTFKSCEL SDSSWMSVAWYPIYRIPVGQTLQNLDACFLTFHSLSTISTTEGMKTVRKQAHFNELLKPG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16100			Protein of unknown function (D...		Lus10016842 [exp]	0	1
AT1G06440			Ubiquitin carboxyl-terminal hy...		Lus10041673 [exp]	2.8	0.8677
AT4G10070			KH domain-containing protein (...		Lus10002947 [exp]	4.6	0.8828
AT2G47330			P-loop containing nucleoside t...		Lus10011466 [exp]	4.9	0.8690
AT3G18100	MYB	ATMYB4R1	myb domain protein 4r1 (.1.2.3...		Lus10009636 [exp]	6.9	0.8470
AT4G21710		NRPB2, EMB1989	EMBRYO DEFECTIVE 1989, DNA-dir...		Lus10011182 [exp]	11.5	0.8736
AT3G60240		CUM2, EIF4G	CUCUMOVIRUS MULTIPLICATION 2, ...		Lus10028156 [exp]	17.3	0.8657
AT5G18230			transcription regulator NOT2/N...		Lus10002632 [exp]	19.9	0.8542
AT1G73930			unknown protein		Lus10032474 [exp]	25.4	0.8478
AT2G21630			Sec23/Sec24 protein transport ...		Lus10043359 [exp]	28.0	0.8283
AT1G01950		AtKINUb, ARK2	Arabidopsis thaliana KINESIN U...		Lus10038007 [exp]	29.1	0.8319

Compare expression of checked genes

Lus10016842 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.