Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016843 [exp] 131 / 2e-39 ND / Lus10008962 [exp] 77 / 5e-18 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016844 pacid=23179046 polypeptide=Lus10016844 locus=Lus10016844.g ID=Lus10016844.BGIv1.0 annot-version=v1.0 ATGCTTCTTGGATCATTTGAAACTTGCAGTTCTGGAAGTCCTTCCACTCATCAGCTGAATGCTGCTTCTCGTCTTCAAAAATATCTTCTTGACCAAACCA CAACATCTGCTAACAATGCTTTGGAGTACTACAACCAAAAGACGGGCCTCTCCTACACGCTTGTTCTTCCCTTGAACAGCAATGGCCGACATCGTATTGG TCTGGATGTCGTACATGTCAACTTTACGGCTAAGAAAGAGGGCTCAGGGTCAGGGAATCAGCCGTTTGAAGACTGTCATGTTTGGGACTGTGTTACTTTT GATCCTGATGATGAACCTAACATCTCTGATCGTTGTACAATGTGCTTGGGAAACTTTGAGACTCCGATTCTCCATCCCGCAGGACACTATGTGGTTGGTC AGTATCCCGAACACACGTACTTTTGTGAGTGCCATCCTGAAATGGCGCCGGATGAATTTCTGGGTTGA
AA sequence Show only first row Show all	>Lus10016844 pacid=23179046 polypeptide=Lus10016844 locus=Lus10016844.g ID=Lus10016844.BGIv1.0 annot-version=v1.0 MLLGSFETCSSGSPSTHQLNAASRLQKYLLDQTTTSANNALEYYNQKTGLSYTLVLPLNSNGRHRIGLDVVHVNFTAKKEGSGSGNQPFEDCHVWDCVTF DPDDEPNISDRCTMCLGNFETPILHPAGHYVVGQYPEHTYFCECHPEMAPDEFLG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10016844 [exp]	0	1
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Lus10022696 [exp]	4.0	0.7560
AT4G29530			Pyridoxal phosphate phosphatas...		Lus10008573 [exp]	4.2	0.8236
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10030546 [exp]	6.1	0.8244
AT2G21250			NAD(P)-linked oxidoreductase s...		Lus10042054 [exp]	7.3	0.7075
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Lus10015748 [exp]	7.9	0.6863
					Lus10031183 [exp]	10.5	0.8134
AT1G69990			Leucine-rich repeat protein ki...		Lus10041486 [exp]	12.0	0.8080
AT5G02920			F-box/RNI-like superfamily pro...		Lus10035325 [exp]	14.0	0.7928
					Lus10021851 [exp]	15.9	0.7874
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10004530 [exp]	17.1	0.7874

Compare expression of checked genes

Lus10016844 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.