Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16120 837 / 0 ATSEB1, COBL7 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) AT5G49270 782 / 0 DER9, MRH4, SHV2, COBL9 SHAVEN 2, MUTANT ROOT HAIR 4, DEFORMED ROOT HAIRS 9, COBRA-LIKE 9, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT3G16860 780 / 0 COBL8 COBRA-like protein 8 precursor (.1) AT3G20580 715 / 0 COBL10 COBRA-like protein 10 precursor (.1) AT4G27110 661 / 0 COBL11 COBRA-like protein 11 precursor (.1) AT3G29810 146 / 6e-38 COBL2 COBRA-like protein 2 precursor (.1) AT5G15630 138 / 4e-35 IRX6, COBL4 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT5G60920 138 / 6e-35 COB COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT3G02210 132 / 4e-33 COBL1 COBRA-like protein 1 precursor (.1) AT1G09790 123 / 7e-30 COBL6 COBRA-like protein 6 precursor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037720 [exp] 1219 / 0 AT4G16120 850 / 0.0 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) Lus10025045 [exp] 687 / 0 AT4G16120 675 / 0.0 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) Lus10011160 [exp] 670 / 0 AT3G20580 804 / 0.0 COBRA-like protein 10 precursor (.1) Lus10043065 [exp] 662 / 0 AT3G20580 791 / 0.0 COBRA-like protein 10 precursor (.1) Lus10010022 [exp] 602 / 0 AT4G16120 581 / 0.0 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) Lus10031972 [exp] 150 / 2e-39 AT5G15630 704 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10035131 [exp] 150 / 3e-39 AT5G15630 704 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10012598 [exp] 147 / 6e-38 AT3G02210 697 / 0.0 COBRA-like protein 1 precursor (.1) Lus10034671 [exp] 146 / 9e-37 AT5G60920 732 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G001100 [exp] 962 / 0 AT4G16120 854 / 0.0 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) Potri.014G125300 [exp] 799 / 0 AT4G16120 766 / 0.0 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) Potri.011G135200 [exp] 708 / 0 AT3G20580 807 / 0.0 COBRA-like protein 10 precursor (.1) Potri.001G419000 [exp] 707 / 0 AT3G20580 804 / 0.0 COBRA-like protein 10 precursor (.1) Potri.004G219200 [exp] 150 / 3e-39 AT1G09790 511 / 2e-180 COBRA-like protein 6 precursor (.1) Potri.015G060000 [exp] 142 / 3e-36 AT5G60920 759 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G117200 [exp] 140 / 5e-36 AT5G15630 679 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.015G060100 [exp] 139 / 3e-35 AT5G15630 739 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G117100 [exp] 133 / 2e-33 AT3G02210 724 / 0.0 COBRA-like protein 1 precursor (.1) Potri.017G098700 [exp] 132 / 2e-33 AT5G60920 614 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04833 [flax] [poplar] COBRA COBRA-like protein
Representative CDS sequence Show only first row Show all	>Lus10016847 pacid=23179070 polypeptide=Lus10016847 locus=Lus10016847.g ID=Lus10016847.BGIv1.0 annot-version=v1.0 ATGCCTCCGTCAGCTATCTCCTTCTCTCTAGCTCTCCCCGTCTTCCTCCTCTTCCTACCGTTTCACACGATTTCCCAGACGACGCCTCCAGCTCCGGCGG GGGATGACGCCGCTCCGGCACCCGCGGCGGACAACTGCAACGGGATTTTCCTGTCTTACCGCTACGGGTCCGGATCCAAGATCAGGCCTACTGATCCGAA ACACCAGCCTTACCGATTCGAGTCCACACTCACCGTCCAGAACAACGGGATCGAGAAGCTCAAGTCCTGGCAAGCCTTTGTAGGGTTTAAGCACGATGAG ATCCTTGTCTCTGCCACCAATGCGATTCTAGCTGACGGCTCCAGCTACCCTGCTTTAGTCGGGAACGGTACCGTTTTCGCCGGGTTCCCTATGACTGACT TGAAGACCGCGATTGAGACCGCTGGGGACTCCACTCAGACTTCCGTCGAGGTTAAGCTCTTGGGGACTCAGTTCGGGGTCAAGCCGCCGGCGATTCCTTG GCCGACTAATATTACTCTGGTGAATGATGGATGGTCTTGCCCTGCTACCACCACTCTAGGCGGTGCTATGTCGACTTGCTGCGTCAAAGACGAGAAAGCC AAATCGAACATCACATTACTAGATGGGGATTTCTTGCCTCGCCAGAGTGGCGATTTGACGATAGCTTACGATGTGATCCGAGCTTATGATTCGAGTTACT GGGCACAAGTTACCATCACCAACCACAATCACTTAGGCCGTCTCGATAACTGGAAACTGAGCTGGGACTGGATGCAGGATGAGTTCATCAACTCAATGAA GGGTGCGTATCCTTCACTCGTAGATTCCTCTCCCTGCATATTTGGTCCTCAGGGCGAATACTACAAACAGCTGGACTTCTCCACCGTGCTGAACTGTGAA AGGAGACCGACAATTATCGATCTGCCCCCAACCAAGTTCAACGACACCACACTCGGAATGATCCCTTTTTGTTGCCGGAACGGCACAATCTTGCCACCAT CTATGGACCCCAGCAAGTCGGTCTCTTCTTTCCAGATGCAGGTTTTCAAAATGCCTCCTAATCTGACCCGCTCAGAGCTTTCCCCGCCACAGAACTGGAA GATCAATGGCACGTTGAACCCTGATTATCAATGTGGACCTCCTGTTAGGGTGAGCCCAAGTGAGTTCCTGGACCCAAGTGGTTTACCATCGAATTCTACT GCAGTTGCTACTTGGCAGGTGGTGTGCAACATCACGCAACAGAAGGGATCGAGCCCTCGTTGCTGCGTTTCATTCTCCGCATTCTACAACGATTCGGTTG TCCCATGCAATACCTGTGCTTGTGGGTGCCCTAATAAAGCAGCTTCTCAGACTTGTAGTGCAAATACTCCGGCGGTTCTTCTTCCGCCCAATGCTCTCCT GGTTCCTTTTGAGAATCGTTCCGCCATGACCGCTGCTTGGGCCAACATCAAGCATCGAGCACTCCCCAACCCGATGCCGTGTGCTGATAACTGTGGGGTG AGCATCAATTGGCATGTGAATACTGATTACAGTCGAGGATGGAGTTCTAGGATCACGCTCTTCAACTGGGCGGAGATTCCTTTCCCTGATTGGTTTGTTG CCGTCGAAATGGACAAAGCAGCCGGAGGTTTCGAAGCCATGTATTCATTTAATGGAACCATGCTGCCGAATTCCAACAACACCATATTCATGCAGGGTCT TCCTGGACTGAACTACCTAGTTGGGGAGACTGATGGTCTCAACCCAAGCAAGGATCCAAGAGTCCCCGGAAAACAGCAGTCTGTGGTCTCATTTACCAAG AGAACCACACCTGGAATTAATGTGCCACTCGGAGATGGTTTCCCTACTAAAGTGTTCTTCAATGGTGAAGAATGTTCTCTTCCTACAATGTACCCAACGA GCAGCGTTAACCGAAGGGCTCCTGTGACAATTCTGTCTCTAATACTAGGAACACTGGTGGCATCCCTACTGAGGCAGGATCTATGGTAG
AA sequence Show only first row Show all	>Lus10016847 pacid=23179070 polypeptide=Lus10016847 locus=Lus10016847.g ID=Lus10016847.BGIv1.0 annot-version=v1.0 MPPSAISFSLALPVFLLFLPFHTISQTTPPAPAGDDAAPAPAADNCNGIFLSYRYGSGSKIRPTDPKHQPYRFESTLTVQNNGIEKLKSWQAFVGFKHDE ILVSATNAILADGSSYPALVGNGTVFAGFPMTDLKTAIETAGDSTQTSVEVKLLGTQFGVKPPAIPWPTNITLVNDGWSCPATTTLGGAMSTCCVKDEKA KSNITLLDGDFLPRQSGDLTIAYDVIRAYDSSYWAQVTITNHNHLGRLDNWKLSWDWMQDEFINSMKGAYPSLVDSSPCIFGPQGEYYKQLDFSTVLNCE RRPTIIDLPPTKFNDTTLGMIPFCCRNGTILPPSMDPSKSVSSFQMQVFKMPPNLTRSELSPPQNWKINGTLNPDYQCGPPVRVSPSEFLDPSGLPSNST AVATWQVVCNITQQKGSSPRCCVSFSAFYNDSVVPCNTCACGCPNKAASQTCSANTPAVLLPPNALLVPFENRSAMTAAWANIKHRALPNPMPCADNCGV SINWHVNTDYSRGWSSRITLFNWAEIPFPDWFVAVEMDKAAGGFEAMYSFNGTMLPNSNNTIFMQGLPGLNYLVGETDGLNPSKDPRVPGKQQSVVSFTK RTTPGINVPLGDGFPTKVFFNGEECSLPTMYPTSSVNRRAPVTILSLILGTLVASLLRQDLW

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Lus10016847 [exp]	0	1
AT5G38700			unknown protein		Lus10002433 [exp]	1.0	0.9753
AT5G18150			Methyltransferase-related prot...		Lus10034423 [exp]	1.4	0.9580
AT2G12400			unknown protein		Lus10008028 [exp]	2.4	0.9463
AT4G34320			Protein of unknown function (D...		Lus10040489 [exp]	3.5	0.9522
AT3G54100			O-fucosyltransferase family pr...		Lus10021119 [exp]	4.6	0.9573
AT2G37980			O-fucosyltransferase family pr...		Lus10017190 [exp]	5.9	0.9441
AT1G29290			unknown protein		Lus10007309 [exp]	6.3	0.9400
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Lus10023645 [exp]	7.2	0.9148
AT1G70090		GATL9, LGT8	GALACTURONOSYLTRANSFERASE-LIKE...		Lus10010727 [exp]	7.3	0.9363
AT4G04720		CPK21	calcium-dependent protein kina...		Lus10006777 [exp]	7.6	0.9120

Compare expression of checked genes

Lus10016847 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.