Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45720 301 / 5e-98 ARM repeat superfamily protein (.1.2) AT1G01830 249 / 4e-78 ARM repeat superfamily protein (.1.2.3) AT5G50900 123 / 6e-31 ARM repeat superfamily protein (.1) AT2G05810 81 / 1e-16 ARM repeat superfamily protein (.1.2) AT1G61350 76 / 7e-15 ARM repeat superfamily protein (.1) AT2G23140 58 / 4e-09 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT5G67340 53 / 2e-07 ARM repeat superfamily protein (.1) AT5G58680 49 / 2e-06 ARM repeat superfamily protein (.1) AT3G01400 47 / 7e-06 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041369 [exp] 444 / 1e-153 AT2G45720 699 / 0.0 ARM repeat superfamily protein (.1.2) Lus10036559 [exp] 440 / 2e-152 AT2G45720 699 / 0.0 ARM repeat superfamily protein (.1.2) Lus10024899 [exp] 62 / 3e-10 AT2G23140 551 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10022919 [exp] 62 / 3e-10 AT2G23140 549 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10029995 [exp] 59 / 2e-09 AT2G05810 438 / 5e-149 ARM repeat superfamily protein (.1.2) Lus10011514 [exp] 57 / 1e-08 AT2G23140 916 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10011516 [exp] 56 / 3e-08 AT2G23140 410 / 5e-134 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10019308 [exp] 55 / 8e-08 AT2G23140 911 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10018423 [exp] 52 / 6e-07 AT1G61350 499 / 2e-171 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G076500 [exp] 334 / 4e-111 AT2G45720 736 / 0.0 ARM repeat superfamily protein (.1.2) Potri.002G153700 [exp] 326 / 6e-108 AT2G45720 717 / 0.0 ARM repeat superfamily protein (.1.2) Potri.012G104400 [exp] 124 / 2e-31 AT5G50900 624 / 0.0 ARM repeat superfamily protein (.1) Potri.015G103700 [exp] 115 / 3e-28 AT5G50900 546 / 0.0 ARM repeat superfamily protein (.1) Potri.004G033800 [exp] 99 / 9e-23 AT1G61350 629 / 0.0 ARM repeat superfamily protein (.1) Potri.011G042300 [exp] 99 / 1e-22 AT1G61350 622 / 0.0 ARM repeat superfamily protein (.1) Potri.014G158700 [exp] 83 / 3e-17 AT2G05810 506 / 1e-174 ARM repeat superfamily protein (.1.2) Potri.002G037700 [exp] 66 / 1e-11 AT3G54790 707 / 0.0 ARM repeat superfamily protein (.1.2) Potri.005G225400 [exp] 66 / 1e-11 AT3G54790 736 / 0.0 ARM repeat superfamily protein (.1.2) Potri.007G051000 [exp] 54 / 1e-07 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat
Representative CDS sequence Show only first row Show all	>Lus10016848 pacid=23179099 polypeptide=Lus10016848 locus=Lus10016848.g ID=Lus10016848.BGIv1.0 annot-version=v1.0 ATGGGGGAAGGAAAAGGCCGTCTTTTCGCTCCAGACGCTTTCGAAGCATCGATCGTCGACCATGGCGGAATTCAGCCGCTGATCGAGCTGTGTAAAACAG GGGACTCTTTTTCTCATGCTGCATCAGCTTGCACACTGAAGAACATTTCCACCGTGCGGGAAGTTCGGCAGAGTCTCACTGAAAAAGGAGCTGTGAAGGT AACCATCGACCTTCTAGAATGCGGGATCCTGCTCGGAACGAAAGAATACGCAGCGGAATGCCTACAGAATCTCACCGCAAGCAACAAGAGCTTGCGAAGA ATTGTGATATCGGAAGGCGGGATTCGGTCCTCGTTAGCGTATCTCGACAACACTTCTCTGCCTCAGGAATCTCCAATTGCAGCATTGAGGAATTTGGTCA ACTCTGTTTCAATGGAAACCCTGGTTTCGTCCGGGTTCTTCCCCCGAATCGTCCACGTGCTAAAGTCGGGATCTTTAGGAGCGCAACAGGCCGCCGCGTC AGCAATCTGTCGAGTATGCGTGTCGAATTCGGAGATGAAGAAGCTAGTGGGGGAAGCGCGGTGCATTCCTTTACTCATCAAACTACTGGAGGCAAAATCG AACGGAGCGAGGGAGGCGTCCGCTCAGGCTATTTCGAGCTTGATGACGGTATCACAGAACACGAAGGAGGTTAAGAAGGATTTCGGGAGGAGCGTGCTGT GTTTGGTGCAGTTGTTGGAGGCTAGCCCGCAGTACGCGGTGGTGTGCCTTTCGGGGCTTTCGTCGACCAAGAAGTGTAGAAAGATGATGGTGTCGTACGG GGCAAGCGGGTACTTGAAGAAGCTGATTGGGGCACAAACCATGCCTTGTGTTACGGCCACGTTTCTGCATATTGTGGACCCTAAACGTACCCATTCTTGT TCTCTTTCCTTTGATCTTCTCAAGATTGGACTCCCGTTGCATGCATTATATAAAATCTTGATTTTCTTTTCCTTATTGATTTTATTGGGGGGTTCAGATT TATCTCTGCCGATGGTGCATTTATTCATTCCAAATAATTAA
AA sequence Show only first row Show all	>Lus10016848 pacid=23179099 polypeptide=Lus10016848 locus=Lus10016848.g ID=Lus10016848.BGIv1.0 annot-version=v1.0 MGEGKGRLFAPDAFEASIVDHGGIQPLIELCKTGDSFSHAASACTLKNISTVREVRQSLTEKGAVKVTIDLLECGILLGTKEYAAECLQNLTASNKSLRR IVISEGGIRSSLAYLDNTSLPQESPIAALRNLVNSVSMETLVSSGFFPRIVHVLKSGSLGAQQAAASAICRVCVSNSEMKKLVGEARCIPLLIKLLEAKS NGAREASAQAISSLMTVSQNTKEVKKDFGRSVLCLVQLLEASPQYAVVCLSGLSSTKKCRKMMVSYGASGYLKKLIGAQTMPCVTATFLHIVDPKRTHSC SLSFDLLKIGLPLHALYKILIFFSLLILLGGSDLSLPMVHLFIPNN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45720			ARM repeat superfamily protein...		Lus10016848 [exp]	0	1
AT4G34320			Protein of unknown function (D...		Lus10040489 [exp]	5.1	0.9002
AT1G05160		ATKAO1, CYP88A3	ENT-KAURENOIC ACID OXYDASE 1, ...		Lus10036671 [exp]	6.3	0.8664
AT3G51710			D-mannose binding lectin prote...		Lus10025259 [exp]	8.0	0.8459
AT1G11000		ATMLO4, MLO4	MILDEW RESISTANCE LOCUS O 4, S...		Lus10015461 [exp]	11.3	0.8928
AT5G17680			disease resistance protein (TI...		Lus10043227 [exp]	12.2	0.8461
AT1G56140			Leucine-rich repeat transmembr...		Lus10031777 [exp]	15.1	0.8692
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Lus10016847 [exp]	15.7	0.8762
AT5G38700			unknown protein		Lus10002433 [exp]	19.7	0.8760
					Lus10000510 [exp]	22.8	0.8563
					Lus10034192 [exp]	23.1	0.8698

Compare expression of checked genes

Lus10016848 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.