Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16143 830 / 0 IMPA-2 importin alpha isoform 2 (.1.2) AT3G06720 818 / 0 IMPA1, IMPA-1, AIMPALPHA, ATKAPALPHA, AT-IMP importin alpha isoform 1 (.1.2) AT1G09270 739 / 0 IMPA-4 importin alpha isoform 4 (.1.2.3) AT1G02690 719 / 0 IMPA-6 importin alpha isoform 6 (.1.2) AT4G02150 718 / 0 IMPA-3, MOS6, ATIMPALPHA3 MODIFIER OF SNC1, 6, IMPORTIN ALPHA ISOFORM 3, IMPORTIN ALPHA 3, ARM repeat superfamily protein (.1) AT5G49310 619 / 0 IMPA-5 importin alpha isoform 5 (.1) AT3G05720 583 / 0 IMPA-7 importin alpha isoform 7 (.1) AT5G52000 389 / 2e-131 IMPA-8 importin alpha isoform 8 (.1) AT1G32880 176 / 2e-52 ARM repeat superfamily protein (.1) AT5G03070 166 / 4e-45 IMPA-9 importin alpha isoform 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037722 [exp] 992 / 0 AT3G06720 884 / 0.0 importin alpha isoform 1 (.1.2) Lus10031398 [exp] 883 / 0 AT3G06720 925 / 0.0 importin alpha isoform 1 (.1.2) Lus10010933 [exp] 875 / 0 AT3G06720 922 / 0.0 importin alpha isoform 1 (.1.2) Lus10036452 [exp] 832 / 0 AT4G16143 825 / 0.0 importin alpha isoform 2 (.1.2) Lus10010028 [exp] 810 / 0 AT3G06720 862 / 0.0 importin alpha isoform 1 (.1.2) Lus10036330 [exp] 808 / 0 AT3G06720 874 / 0.0 importin alpha isoform 1 (.1.2) Lus10041124 [exp] 725 / 0 AT4G16143 733 / 0.0 importin alpha isoform 2 (.1.2) Lus10001480 [exp] 180 / 2e-50 AT5G03070 729 / 0.0 importin alpha isoform 9 (.1) Lus10008480 [exp] 175 / 2e-48 AT5G03070 738 / 0.0 importin alpha isoform 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G214100 [exp] 882 / 0 AT4G16143 881 / 0.0 importin alpha isoform 2 (.1.2) Potri.010G001400 [exp] 875 / 0 AT4G16143 849 / 0.0 importin alpha isoform 2 (.1.2) Potri.013G010900 [exp] 872 / 0 AT3G06720 869 / 0.0 importin alpha isoform 1 (.1.2) Potri.005G020400 [exp] 867 / 0 AT3G06720 880 / 0.0 importin alpha isoform 1 (.1.2) Potri.014G124200 [exp] 807 / 0 AT3G06720 868 / 0.0 importin alpha isoform 1 (.1.2) Potri.002G199600 [exp] 788 / 0 AT3G06720 858 / 0.0 importin alpha isoform 1 (.1.2) Potri.013G007300 [exp] 768 / 0 AT1G09270 877 / 0.0 importin alpha isoform 4 (.1.2.3) Potri.016G086600 [exp] 169 / 2e-46 AT5G03070 801 / 0.0 importin alpha isoform 9 (.1) Potri.002G052700 [exp] 64 / 2e-10 AT5G19330 994 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Potri.005G210000 [exp] 62 / 8e-10 AT5G19330 977 / 0.0 ARM repeat protein interacting with ABF2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat CL0020 [flax] [poplar] TPR PF01749 [flax] [poplar] IBB Importin beta binding domain
Representative CDS sequence Show only first row Show all	>Lus10016850 pacid=23179042 polypeptide=Lus10016850 locus=Lus10016850.g ID=Lus10016850.BGIv1.0 annot-version=v1.0 ATGTCTCTGAGGCCAAACGCCAGGACCGACATTCGTCGGAACAGGTACAAGGTCGCCGTCGACGCTGATGAAGGTCGGCGGAGGAGAGAGGATAATATGG TGGAGATCCGGAAGAACAAGCGCGAGGAGAACTTGATGAAGAAGCGCCGGGAAGGACTTCAAGCGCATCAGCTCTCGGCATCAGCTCTCCCTGGTGCTAT GGAGAAAAAGTTGGAAAGCTTGCCTGCTCTGGTTTCTAGCATTTGGTCTGATGATGGTAATCTCCAGCTTGAAGCCACAACTCAATTCCGAAAGCTTCTC TCAATTGAAAGAAGTCCTCCAATCGAGGAGGTTATTCAGTCTGGTGTCGTTCCTCGCTTTGTGGAGTTTCTCGTCAGGGAGGATTTCCCTCAGCTTCAGT TCGAAGCTGCTTGGGCTCTCACCAATATTGCGTCTGGTACCTCTGAGAATACCAAAGTTGTGATTGATCATGATGCTGTTCCAATATTTGTTAAGCTTCT AGGGTCTTCCAGTGACGATGTACGAGAGCAGGCCGTGTGGGCTTTGGGTAATGTTGCTGGTGATTCCCCAAAATGCCGTGACCTTGTTCTGAGTCGTGGA GCACTGATTCCGCTTCTGGCGCAATTGAATGAACATGCTAAGCTTTCAATGTTGAGGAATGCCACTTGGACATTATCAAACTTCTGTAGGGGCAAGCCTC AACCTCCTTTTGACCAGGTGAGGCCAGCACTTCCTGCACTTGCACATCTTGTGTGCTCATCTGATGAGGAAGTCCTGACGGATGCATGCTGGGCGCTATC CTATCTTTCTGATGGCACAAATGATAAAATCCAAGCTGTGATTGACGCTGGTGTCTGCAGTAAACTTGTTCAACTTCTCCTCCATCCATCTCCATCAGTG CTTGTGCCTGCCCTTCGTACTATTGGAAACATTGTAACAGGGGATGATTCGCAAACTCAGTGTATAATTGGCCATAATGCACTTCCTTGCCTTCTCAACC TATTGAACCAAAACTTTAAGAAGAGCATTAAGAAAGAAGCTTGCTGGACCATCTCAAACATTACAGCAGGAAACAAGGAACAGATTCAGGCTGTCATTGA GGCAGGTCTCATTGGACCTCTAGTTAACTTACTTCAAAATGCTGAGTTTGATATCAAGAAAGAAGCTGCTTGGGCTCTCTCTAATGCTACTTCTGGTGGT AGCCAGGAACAAATCAAGTATCTGGTGAGCCACGGATGCATAAAACCGTTGTGTGATCTCCTTGTCTGCCCCGATCCAAGAATCGTCACAGTATGCCTTG AAGGGCTAGAGAATATCTTGAAGGTTGGAGAAGCAGAGAAGAACGCAGGAAACAGTGAAGTCAATGTGTTTGCCCAGATGATCGATGATGCTGAAGGACT TGAGAAGATAGAGAATCTGCAGAGCCATGATAACAATGAGATTTACGAGAAGGCAGTCAAGATTTTGGAGACGTATTGGCTTGAGGAAGAAGACGAGACA TTACCTCCCGGTGACGGTAACCAGCAACAAGGTTTCTAG
AA sequence Show only first row Show all	>Lus10016850 pacid=23179042 polypeptide=Lus10016850 locus=Lus10016850.g ID=Lus10016850.BGIv1.0 annot-version=v1.0 MSLRPNARTDIRRNRYKVAVDADEGRRRREDNMVEIRKNKREENLMKKRREGLQAHQLSASALPGAMEKKLESLPALVSSIWSDDGNLQLEATTQFRKLL SIERSPPIEEVIQSGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHDAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLSRG ALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVRPALPALAHLVCSSDEEVLTDACWALSYLSDGTNDKIQAVIDAGVCSKLVQLLLHPSPSV LVPALRTIGNIVTGDDSQTQCIIGHNALPCLLNLLNQNFKKSIKKEACWTISNITAGNKEQIQAVIEAGLIGPLVNLLQNAEFDIKKEAAWALSNATSGG SQEQIKYLVSHGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNAGNSEVNVFAQMIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDET LPPGDGNQQQGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16143		IMPA-2	importin alpha isoform 2 (.1.2...		Lus10016850 [exp]	0	1
AT2G40980			Protein kinase superfamily pro...		Lus10015685 [exp]	2.8	0.8515
AT4G04950		AtGRXS17	Arabidopsis thaliana monothiol...		Lus10011188 [exp]	3.0	0.8728
AT5G57020		ATNMT1, NMT1	ARABIDOPSIS THALIANA MYRISTOYL...		Lus10021577 [exp]	4.1	0.8094
AT5G57870		eIFiso4G1	eukaryotic translation Initiat...		Lus10035813 [exp]	8.8	0.8416
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Lus10037722 [exp]	9.5	0.8242
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Lus10002178 [exp]	14.5	0.8130
AT5G57870		eIFiso4G1	eukaryotic translation Initiat...		Lus10036594 [exp]	15.5	0.8124
AT5G06680		ATSPC98, SPC98,...	ARABIDOPSIS THALIANA GAMMA TUB...		Lus10016246 [exp]	15.9	0.8314
AT1G74690		IQD31	IQ-domain 31 (.1)		Lus10042173 [exp]	17.0	0.8320
AT2G46520			cellular apoptosis susceptibil...		Lus10005968 [exp]	17.2	0.8220

Compare expression of checked genes

Lus10016850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.