Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49320 276 / 1e-93 Protein of unknown function (DUF1218) (.1) AT1G13380 44 / 4e-05 Protein of unknown function (DUF1218) (.1) AT1G61065 42 / 8e-05 Protein of unknown function (DUF1218) (.1) AT1G68220 42 / 0.0002 Protein of unknown function (DUF1218) (.1) AT1G31720 42 / 0.0002 Protein of unknown function (DUF1218) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037723 [exp] 474 / 1e-171 AT5G49320 301 / 2e-103 Protein of unknown function (DUF1218) (.1) Lus10018474 [exp] 43 / 5e-05 AT1G61065 219 / 2e-73 Protein of unknown function (DUF1218) (.1) Lus10034324 [exp] 40 / 0.0006 AT1G13380 275 / 2e-95 Protein of unknown function (DUF1218) (.1) Lus10041447 [exp] 40 / 0.0006 AT1G13380 273 / 1e-94 Protein of unknown function (DUF1218) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G140400 [exp] 305 / 5e-105 AT5G49320 304 / 1e-104 Protein of unknown function (DUF1218) (.1) Potri.008G108900 [exp] 303 / 2e-104 AT5G49320 281 / 2e-95 Protein of unknown function (DUF1218) (.1) Potri.T170901 [exp] 303 / 2e-104 AT5G49320 281 / 2e-95 Protein of unknown function (DUF1218) (.1) Potri.004G038700 [exp] 47 / 3e-06 AT1G61065 205 / 6e-68 Protein of unknown function (DUF1218) (.1) Potri.010G120500 [exp] 41 / 0.0004 AT1G68220 284 / 2e-98 Protein of unknown function (DUF1218) (.1) Potri.008G120900 [exp] 40 / 0.0007 AT1G13380 200 / 9e-66 Protein of unknown function (DUF1218) (.1) Potri.010G124800 [exp] 40 / 0.0008 AT1G13380 208 / 6e-69 Protein of unknown function (DUF1218) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06749 [flax] [poplar] DUF1218 Protein of unknown function (DUF1218)
Representative CDS sequence Show only first row Show all	>Lus10016851 pacid=23179052 polypeptide=Lus10016851 locus=Lus10016851.g ID=Lus10016851.BGIv1.0 annot-version=v1.0 ATGGCACAAGGAAGAGCAGTCACCCATGACGATCTCGCACCAGGTCCTGGAAACTCTGATTTGGGCAGCACAACAGCAGTCTCAGTTATGCTCCTTACAA TTCTCTCTGGTATCTTCTGCTTCTCTCTCTGCCTCATAGCTGAAGCCTCTCGTTCACAGGCTACGTGGGGGGAGAATCGTCAATGCGTGTACAGTGGCAG TGGAGAAACTCCATTGCTGTGTGGAGCAATCGCATTTATCGGATTAGCTGTGGCTATGGTGACTGAACATACTTATCTATTGATCGCAGTTAGCAAAGCT CCCCCTGCTGTTCTCATCGCTTGGGACCCTAACTATGCCCCTTCCAAGGATGTCACTTGGCGAGCTGGAGCCTTTTTCCTCACTACTTGGGTGAGCTTTG CGGTGGCGGAAATCCTGCTGTTGATAGGACTGAGCGTGGAATCGGGACACCTGAAGAGTTGGGGAACACCAAAGCAGAGTTGCCTGGTGATCAGAGAAGG AGTATTCGCTGCTGCCGGAGTGTTTTCCCTCCTCACCGTATTGCTTGCCGGCGGGTTATACCTAACTGCATTTCGGGCGCAGAGAATATCACAAGATCAA GAAAACGTGCGGCGGCAGATACTTGAAGTGTCTGTCCTCCACGCTTCTCCGCCGAGAACACCGCGGCGTGATCACATCGTCGTGGCGGCGGAGAGGGAAG ACCCTGTTCGTTGGGAGAGCCAGGCTGATCGTCTTTCGATCGCTTTGCCGCCTGGTTTGATCAAGCAAATGGGGTTCTTGTAA
AA sequence Show only first row Show all	>Lus10016851 pacid=23179052 polypeptide=Lus10016851 locus=Lus10016851.g ID=Lus10016851.BGIv1.0 annot-version=v1.0 MAQGRAVTHDDLAPGPGNSDLGSTTAVSVMLLTILSGIFCFSLCLIAEASRSQATWGENRQCVYSGSGETPLLCGAIAFIGLAVAMVTEHTYLLIAVSKA PPAVLIAWDPNYAPSKDVTWRAGAFFLTTWVSFAVAEILLLIGLSVESGHLKSWGTPKQSCLVIREGVFAAAGVFSLLTVLLAGGLYLTAFRAQRISQDQ ENVRRQILEVSVLHASPPRTPRRDHIVVAAEREDPVRWESQADRLSIALPPGLIKQMGFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49320			Protein of unknown function (D...		Lus10016851 [exp]	0	1
AT4G27610			unknown protein		Lus10043458 [exp]	7.7	0.8309
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10017604 [exp]	13.4	0.8012
AT5G52190			Sugar isomerase (SIS) family p...		Lus10038873 [exp]	15.3	0.8242
AT1G31170		ATSRX	sulfiredoxin (.1.2.3.4)		Lus10036218 [exp]	16.1	0.8275
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Lus10022278 [exp]	16.2	0.8257
AT3G14630		CYP72A9	"cytochrome P450, family 72, s...		Lus10002311 [exp]	18.7	0.8201
AT5G43950			Plant protein of unknown funct...		Lus10022871 [exp]	19.9	0.8099
AT5G43950			Plant protein of unknown funct...		Lus10024955 [exp]	20.4	0.8092
AT1G65230			Uncharacterized conserved prot...		Lus10020202 [exp]	22.7	0.8285
AT5G17400		ER-ANT1	endoplasmic reticulum-adenine ...		Lus10034658 [exp]	24.7	0.8015

Compare expression of checked genes

Lus10016851 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.