Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26910 129 / 8e-32 unknown protein AT3G58650 120 / 6e-29 unknown protein AT3G05750 96 / 9e-21 unknown protein AT3G53540 44 / 0.0002 unknown protein AT2G45900 44 / 0.0002 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037725 [exp] 496 / 8e-168 AT5G26910 276 / 4e-80 unknown protein Lus10020689 [exp] 124 / 4e-30 AT5G26910 350 / 2e-107 unknown protein Lus10029857 [exp] 124 / 6e-30 AT3G58650 345 / 2e-105 unknown protein Lus10017607 [exp] 59 / 6e-09 AT1G67040 179 / 7e-47 unknown protein Lus10033565 [exp] 59 / 7e-09 AT1G67040 236 / 3e-66 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G140900 [exp] 252 / 1e-74 AT3G58650 235 / 4e-65 unknown protein Potri.008G108600 [exp] 251 / 3e-74 AT3G58650 234 / 6e-65 unknown protein Potri.T171201 [exp] 249 / 1e-73 AT3G58650 235 / 3e-65 unknown protein Potri.005G019700 [exp] 179 / 1e-48 AT5G26910 417 / 4e-132 unknown protein Potri.013G010500 [exp] 161 / 1e-42 AT5G26910 371 / 6e-115 unknown protein Potri.017G116000 [exp] 78 / 4e-15 AT1G67040 317 / 3e-94 unknown protein Potri.004G098300 [exp] 75 / 4e-14 AT1G67040 339 / 2e-102 unknown protein Potri.006G213700 [exp] 44 / 0.0002 AT3G53540 433 / 1e-136 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016854 pacid=23179072 polypeptide=Lus10016854 locus=Lus10016854.g ID=Lus10016854.BGIv1.0 annot-version=v1.0 ATGGAGTCATCTAGGCCTAGAAAGGCGGTAAGCAGACCGATCGAGAAGTTCCAGACTGAGATGCTGCCTCCGAAATCGGCCAAGTCAATCCCCATCACAC ATCATAAACTTCTATCGCCTATAAAGAGAGCCAATTTCGTCTCGAGTAATACTGCTGCTCACATAATGGAAGAAGCTGCAAAGATCATCATCGAGCCTAG TCCTGCAAAGCCAAAGATGACCGGTGTTGGATCTTCTTCATCAGCACCACCCTTGAAAGTTCGTAACTTGAAATCGAGACTCGAGGCTACTCAGAGAACG CCTATATCCGGCTCATCTGCACTGAGAGCCACCCGCGATATGAAGGAGAAACTCGAACCTGCTCCGAGAACTTCCAGGACTGCAGAATCATTTCGAAAAC CTGCCGAGTCAAACGCTGCTAAGTGCCTTAAGGGGCAACCTTTGAACAAAAGCTGGAACGGACCGGCTGATTCAGCATCTTCGAGAGTTTCTCATGAACC TGGGGAAGGATCATCTTCTTCTTCCGGTCAAAAGAGCAAGGGAAAGTCTGTCTCACTGGCTGTTCAAGCAAAGGGAGTTGATGCTATGGAAGAATGTAGC AGCAGCAGCAAATATGACTGCAGACGTCCAAGTCCGATCTCGGTTCTTGACTATTCTTTCTCAACTGAAAGCAGCTGCACATTAGAGAGTATGGACTACA GTAGCAGTACAGAGGGAGGCAAGCAGTGTTCATCTTCCATTCAAGCACAAGAAGTCCTTGGCCTTACCTTTCTTCCCAAGAAACATCAACACCACCCAGA CACAGAGCTACTAGATTCTGCTTCATCGACAAGCTCCAGAATCGCGTCTCTCGCTAGTACAAACAGATCAACCGGCAGTGATAAATCGGACTATTGGGAG GTGGAATACGTCAAACAAGTGCTTGTTTACCTGGACTTGATGTTCCATGACTTTGCCATTGGCAGATGCAGCGAGGTCGTGAATCCCCACCTCTTCGATC AACTGGTGGTTGGAAATCACTTCGATCGAACTAGGCTAGAAAAAAGGGCACTGTTCGACTGCGTGAGCGAATGCCTGGACTTACGATGCAGCAGATACAT CGGCGGAGGGTACAGTGCTTGGTCGAAAGGGACGACAGTGATGAGTAGAAAAGACAGATTGGCTGAAGAATTGCACAGAGAGATTGTAACGTGGAGGAAA ATGGGAGACTGTATGGTCGATGAGCTCGTCGACAAGGACATGAGCAGCCAATACGGGAATTGGCTCGACTATGAGGTAGATGCATTTGGTGTTGGAGAAG AGATTGAAGGGTTAATACTTAACTCCTTGGTTGATGAGTTAGTCGCCGATATCCGGCCCCAAAAACTTACAAACAAGAGGAGATTCATATGA
AA sequence Show only first row Show all	>Lus10016854 pacid=23179072 polypeptide=Lus10016854 locus=Lus10016854.g ID=Lus10016854.BGIv1.0 annot-version=v1.0 MESSRPRKAVSRPIEKFQTEMLPPKSAKSIPITHHKLLSPIKRANFVSSNTAAHIMEEAAKIIIEPSPAKPKMTGVGSSSSAPPLKVRNLKSRLEATQRT PISGSSALRATRDMKEKLEPAPRTSRTAESFRKPAESNAAKCLKGQPLNKSWNGPADSASSRVSHEPGEGSSSSSGQKSKGKSVSLAVQAKGVDAMEECS SSSKYDCRRPSPISVLDYSFSTESSCTLESMDYSSSTEGGKQCSSSIQAQEVLGLTFLPKKHQHHPDTELLDSASSTSSRIASLASTNRSTGSDKSDYWE VEYVKQVLVYLDLMFHDFAIGRCSEVVNPHLFDQLVVGNHFDRTRLEKRALFDCVSECLDLRCSRYIGGGYSAWSKGTTVMSRKDRLAEELHREIVTWRK MGDCMVDELVDKDMSSQYGNWLDYEVDAFGVGEEIEGLILNSLVDELVADIRPQKLTNKRRFI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58650			unknown protein		Lus10016854 [exp]	0	1
AT4G09060			unknown protein		Lus10036467 [exp]	2.4	0.9621
AT5G26910			unknown protein		Lus10037725 [exp]	3.0	0.9627
AT4G17240			unknown protein		Lus10038797 [exp]	6.6	0.9357
AT4G01730			DHHC-type zinc finger family p...		Lus10038029 [exp]	8.0	0.9551
AT3G56370			Leucine-rich repeat protein ki...		Lus10025223 [exp]	8.8	0.9444
AT2G17410	ARID		ARID/BRIGHT DNA-binding domain...		Lus10001618 [exp]	8.8	0.9143
AT5G51600		ATMAP65-3, PLE	PLEIADE, ARABIDOPSIS THALIANA ...		Lus10015684 [exp]	9.3	0.9583
AT3G15550			unknown protein		Lus10035906 [exp]	13.4	0.9481
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Lus10040996 [exp]	14.0	0.9167
AT5G37630		EMB2656	EMBRYO DEFECTIVE 2656, ARM rep...		Lus10020813 [exp]	14.3	0.9449

Compare expression of checked genes

Lus10016854 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.