Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49340 155 / 9e-45 TBL4 TRICHOME BIREFRINGENCE-LIKE 4 (.1) AT1G60790 149 / 4e-42 TBL2 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) AT3G12060 147 / 4e-41 TBL1 TRICHOME BIREFRINGENCE-LIKE 1, Plant protein of unknown function (DUF828) (.1) AT5G06700 138 / 1e-37 TBR TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) AT3G62390 125 / 2e-33 TBL6 TRICHOME BIREFRINGENCE-LIKE 6 (.1) AT1G48880 121 / 3e-32 TBL7 TRICHOME BIREFRINGENCE-LIKE 7 (.1) AT5G20590 117 / 1e-30 TBL5 TRICHOME BIREFRINGENCE-LIKE 5 (.1) AT3G06080 115 / 2e-30 TBL10 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT2G42570 108 / 9e-28 TBL39 TRICHOME BIREFRINGENCE-LIKE 39 (.1) AT5G19160 108 / 2e-27 TBL11 TRICHOME BIREFRINGENCE-LIKE 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037726 [exp] 342 / 2e-117 AT5G49340 435 / 3e-150 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Lus10013035 [exp] 150 / 2e-42 AT1G60790 595 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Lus10021066 [exp] 146 / 2e-40 AT5G06700 671 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Lus10030899 [exp] 139 / 4e-40 AT1G60790 227 / 1e-70 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Lus10004159 [exp] 140 / 1e-38 AT5G06700 552 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Lus10011932 [exp] 120 / 8e-32 AT5G20590 543 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Lus10002430 [exp] 120 / 1e-31 AT3G62390 531 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Lus10029761 [exp] 116 / 2e-30 AT1G48880 447 / 8e-156 TRICHOME BIREFRINGENCE-LIKE 7 (.1) Lus10000988 [exp] 114 / 5e-30 AT1G29050 526 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G108500 [exp] 204 / 1e-63 AT5G49340 460 / 7e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Potri.T171301 [exp] 203 / 4e-63 AT5G49340 461 / 2e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Potri.001G010900 [exp] 151 / 8e-43 AT5G06700 472 / 5e-161 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.010G043300 [exp] 145 / 1e-40 AT1G60790 604 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Potri.006G193900 [exp] 143 / 2e-39 AT5G06700 681 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.016G059300 [exp] 137 / 2e-37 AT5G06700 654 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.018G133000 [exp] 130 / 3e-35 AT5G20590 606 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.002G195800 [exp] 130 / 7e-35 AT3G62390 593 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Potri.006G071500 [exp] 127 / 4e-34 AT5G20590 633 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.002G071900 [exp] 125 / 6e-34 AT1G48880 478 / 1e-167 TRICHOME BIREFRINGENCE-LIKE 7 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016856 pacid=23179064 polypeptide=Lus10016856 locus=Lus10016856.g ID=Lus10016856.BGIv1.0 annot-version=v1.0 ATGATCACCTTCCTCTGCCTGTCGCCTTCCTTCTTCTTCTTCACCGCTACCACCAATGACTCCGGCGCTGGCGCCGCGTCCATTCCCTCCGCTTCCCGCC TTTTCTCCGTCGACGCAAACCACGAAGAATCCCTCTCTTCTTTCTCTCCCGTCGATTCCTTCAACACTTGCCCCGTCTTCTCGGAATGCCCGACGCTCTC TTCTGTCGCCGCAGCTACGAAATTTACTCCTCGCTGGAAATCCCGAAACGAAGACGAGTTCTTGACTCGGCCCACTTCATGCAATATCTTTGACGGGAAT TGGGTTGTCGACCACTGGGATCCGGTTTACCCGCCCGGTTCATGCCCCTTCCTCGACGATTCGTCCAATTGCTTCAAGAACGGCCGGGACTTTTTGGGTT ATCTCCGGTGCCGGTGGAAGCCGTACGGTTGCAACATTCCACGGTTTAACGGGAGAAAGATGCTGGAGATTCTGAGAGGGAGGAGACTGGTATTCGTGGG AGATTCTTTGAGCAGGAACATGTGGCAAGCTCTGGTGTGTTCGTTGCGAGAATCGGTGAAGAACAAGAGTGGAATCTTTGAAGAGTTTGGCAGAAGGGAG TTCAGAACGCAGGGGTTCTACTCTGTGAAATTCACCGTAAGTCCATTAAACGGTACTGTTTGTTTCTAA
AA sequence Show only first row Show all	>Lus10016856 pacid=23179064 polypeptide=Lus10016856 locus=Lus10016856.g ID=Lus10016856.BGIv1.0 annot-version=v1.0 MITFLCLSPSFFFFTATTNDSGAGAASIPSASRLFSVDANHEESLSSFSPVDSFNTCPVFSECPTLSSVAAATKFTPRWKSRNEDEFLTRPTSCNIFDGN WVVDHWDPVYPPGSCPFLDDSSNCFKNGRDFLGYLRCRWKPYGCNIPRFNGRKMLEILRGRRLVFVGDSLSRNMWQALVCSLRESVKNKSGIFEEFGRRE FRTQGFYSVKFTVSPLNGTVCF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49340		TBL4	TRICHOME BIREFRINGENCE-LIKE 4 ...		Lus10016856 [exp]	0	1
					Lus10016100 [exp]	3.7	0.9018
AT5G10770			Eukaryotic aspartyl protease f...		Lus10038732 [exp]	4.0	0.9159
					Lus10000488 [exp]	6.0	0.8969
AT5G53390			O-acyltransferase (WSD1-like) ...		Lus10039843 [exp]	10.2	0.9012
AT4G34810			SAUR-like auxin-responsive pro...		Lus10042379 [exp]	11.7	0.8396
AT2G40100		LHCB4.3	light harvesting complex photo...		Lus10030403 [exp]	12.0	0.8421
AT1G12480		SLAC1, RCD3, CD...	SLOW ANION CHANNEL-ASSOCIATED ...		Lus10007023 [exp]	14.1	0.8529
AT5G65730		XTH6, XTR10	xyloglucan endotransglucosylas...		Lus10039643 [exp]	14.2	0.8623
AT5G57800		CER3, FLP1, YRE...	FACELESS POLLEN 1, ECERIFERUM ...		Lus10008895 [exp]	14.8	0.8843
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10003897 [exp]	16.2	0.7694

Compare expression of checked genes

Lus10016856 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.