Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49350 133 / 3e-38 Glycine-rich protein family (.1.2) AT1G56320 111 / 1e-30 unknown protein AT4G16146 71 / 1e-15 cAMP-regulated phosphoprotein 19-related protein (.1) AT5G64130 66 / 1e-13 cAMP-regulated phosphoprotein 19-related protein (.1.2.3) AT1G69510 65 / 3e-13 cAMP-regulated phosphoprotein 19-related protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037727 [exp] 284 / 6e-96 AT5G49350 136 / 1e-38 Glycine-rich protein family (.1.2) Lus10041125 [exp] 123 / 1e-34 AT5G49350 99 / 2e-25 Glycine-rich protein family (.1.2) Lus10031407 [exp] 79 / 2e-17 ND 85 / 1e-20 Lus10030448 [exp] 67 / 1e-13 AT1G69510 123 / 1e-36 cAMP-regulated phosphoprotein 19-related protein (.1.2.3) Lus10026615 [exp] 67 / 2e-13 AT1G69510 123 / 1e-36 cAMP-regulated phosphoprotein 19-related protein (.1.2.3) Lus10036768 [exp] 64 / 7e-13 AT5G64130 116 / 6e-35 cAMP-regulated phosphoprotein 19-related protein (.1.2.3) Lus10010927 [exp] 67 / 1e-12 AT1G56140 343 / 2e-107 Leucine-rich repeat transmembrane protein kinase (.1) Lus10009146 [exp] 62 / 2e-12 AT5G64130 150 / 2e-48 cAMP-regulated phosphoprotein 19-related protein (.1.2.3) Lus10037162 [exp] 66 / 5e-12 AT1G69523 268 / 4e-84 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G108400 [exp] 160 / 6e-49 AT5G49350 138 / 9e-41 Glycine-rich protein family (.1.2) Potri.005G019200 [exp] 115 / 5e-32 AT1G56320 130 / 4e-39 unknown protein Potri.008G108201 [exp] 84 / 8e-21 AT4G16146 103 / 4e-30 cAMP-regulated phosphoprotein 19-related protein (.1) Potri.010G141300 [exp] 81 / 2e-19 AT4G16146 105 / 3e-31 cAMP-regulated phosphoprotein 19-related protein (.1) Potri.017G102700 [exp] 66 / 1e-13 AT5G64130 159 / 1e-51 cAMP-regulated phosphoprotein 19-related protein (.1.2.3) Potri.004G111900 [exp] 64 / 4e-13 AT5G64130 152 / 4e-49 cAMP-regulated phosphoprotein 19-related protein (.1.2.3) Potri.010G167000 [exp] 65 / 1e-12 AT1G69510 104 / 4e-29 cAMP-regulated phosphoprotein 19-related protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04667 [flax] [poplar] Endosulfine cAMP-regulated phosphoprotein/endosulfine conserved region
Representative CDS sequence Show only first row Show all	>Lus10016857 pacid=23179055 polypeptide=Lus10016857 locus=Lus10016857.g ID=Lus10016857.BGIv1.0 annot-version=v1.0 ATGGCGGATTGCGGCGGAAACCTCCTCCAGGTTGGACAGAAGTACGGTGGGCTTGCACCAAAGAAGAAGCCATTGATTGCAAAGGACAATGAACGTGCAT TCTTCGATTCGGCGGATTGGGCTCTTTGTAAGCAAGGATCAGGGACAAGTAGTGAGACGTCGACGGTAGTAGCAATGGAAACCTTGCAACCTAAATTACA GCTGATGATCGATATGACAGGAAAGGCAGATGTAGATGCACCTTACTTGGACGTTGGAAACCGCGGAAGCTCAGGAACCTCTCCGACCTCCTCCTCATCT TCAGGTAGCGATGATGATACGAGCAGTAGTCATCATGCTGACGATCCTGCCCAAATCGTCGCAAGAGCTTTGGTATGCTTCAATGACAGGAAGATATACA GAACCTGCGATGAAGACTACAGGCTGAACGAGAGCGGGAGGCTGAGCGTTCCACTGGATCAAGTGGACGCCTACTGCGGTGGGCCATGCTTTTCGGAGAC TAACTTGGTGCTGGACTGTGTCGAAGGGATAATGGAGAACTTTGTATTCTATAACACTGCCACGATTGAGGATGTTAAGGACACCATGAAGGCAGGGTGC AGTGATGGTCCTGATAGAGGCAATTTCGATGTGTCGGAACATCTTCAGGCTTCTCAGAGCACTGTTGTGAAGTCTGCCAGTGGATTTCTCTTCTTGTCTG CTCTTGTTTCCGCCATTGCTGCTGCTCAGGCTTGGTGA
AA sequence Show only first row Show all	>Lus10016857 pacid=23179055 polypeptide=Lus10016857 locus=Lus10016857.g ID=Lus10016857.BGIv1.0 annot-version=v1.0 MADCGGNLLQVGQKYGGLAPKKKPLIAKDNERAFFDSADWALCKQGSGTSSETSTVVAMETLQPKLQLMIDMTGKADVDAPYLDVGNRGSSGTSPTSSSS SGSDDDTSSSHHADDPAQIVARALVCFNDRKIYRTCDEDYRLNESGRLSVPLDQVDAYCGGPCFSETNLVLDCVEGIMENFVFYNTATIEDVKDTMKAGC SDGPDRGNFDVSEHLQASQSTVVKSASGFLFLSALVSAIAAAQAW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49350			Glycine-rich protein family (....		Lus10016857 [exp]	0	1
AT5G47530			Auxin-responsive family protei...		Lus10010498 [exp]	1.4	0.9415
AT3G11780			MD-2-related lipid recognition...		Lus10021256 [exp]	3.3	0.9432
AT5G44550			Uncharacterised protein family...		Lus10000781 [exp]	9.2	0.9251
AT4G10380		AtNIP5;1, NIP5;...	NOD26-LIKE MIP 8, NOD26-LIKE M...		Lus10010153 [exp]	9.2	0.9348
AT3G24570			Peroxisomal membrane 22 kDa (M...		Lus10011679 [exp]	10.4	0.9322
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10013480 [exp]	10.9	0.9151
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Lus10022471 [exp]	11.0	0.9283
AT3G18400	NAC	ANAC058	NAC domain containing protein ...		Lus10027227 [exp]	11.4	0.9209
AT3G25640			Protein of unknown function, D...		Lus10034386 [exp]	13.8	0.9296
AT4G16640			Matrixin family protein (.1)		Lus10028955 [exp]	15.2	0.9190

Compare expression of checked genes

Lus10016857 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.