Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02640 917 / 0 ATBXL2, BXL2 beta-xylosidase 2 (.1) AT5G49360 911 / 0 ATBXL1, BXL1 beta-xylosidase 1 (.1) AT5G64570 781 / 0 ATBXL4, XYL4 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) AT5G09730 743 / 0 ATBXL3, XYL3, BXL3, ATBX3 beta-xylosidase 3 (.1) AT3G19620 696 / 0 Glycosyl hydrolase family protein (.1) AT1G78060 606 / 0 Glycosyl hydrolase family protein (.1) AT5G10560 605 / 0 Glycosyl hydrolase family protein (.1) AT5G09700 517 / 7e-178 Glycosyl hydrolase family protein (.1) AT3G47050 135 / 5e-33 Glycosyl hydrolase family protein (.1.2) AT3G47000 134 / 7e-33 Glycosyl hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010015 [exp] 906 / 0 AT1G02640 1148 / 0.0 beta-xylosidase 2 (.1) Lus10020966 [exp] 743 / 0 AT5G64570 1181 / 0.0 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) Lus10022374 [exp] 637 / 0 AT1G78060 1065 / 0.0 Glycosyl hydrolase family protein (.1) Lus10019099 [exp] 634 / 0 AT1G78060 1007 / 0.0 Glycosyl hydrolase family protein (.1) Lus10004271 [exp] 621 / 0 AT5G10560 989 / 0.0 Glycosyl hydrolase family protein (.1) Lus10007775 [exp] 485 / 3e-165 AT1G78060 725 / 0.0 Glycosyl hydrolase family protein (.1) Lus10019240 [exp] 271 / 2e-82 AT5G10560 407 / 1e-133 Glycosyl hydrolase family protein (.1) Lus10037728 [exp] 197 / 1e-59 AT5G49360 177 / 1e-52 beta-xylosidase 1 (.1) Lus10025036 [exp] 132 / 1e-34 AT5G09730 182 / 4e-53 beta-xylosidase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G141400 [exp] 1026 / 0 AT5G49360 1113 / 0.0 beta-xylosidase 1 (.1) Potri.008G108100 [exp] 991 / 0 AT5G49360 1104 / 0.0 beta-xylosidase 1 (.1) Potri.002G197200 [exp] 959 / 0 AT1G02640 1189 / 0.0 beta-xylosidase 2 (.1) Potri.014G122200 [exp] 954 / 0 AT1G02640 1154 / 0.0 beta-xylosidase 2 (.1) Potri.001G206800 [exp] 761 / 0 AT5G64570 1168 / 0.0 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) Potri.003G022900 [exp] 751 / 0 AT5G64570 1138 / 0.0 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) Potri.001G294700 [exp] 683 / 0 AT3G19620 1080 / 0.0 Glycosyl hydrolase family protein (.1) Potri.007G114300 [exp] 640 / 0 AT3G19620 776 / 0.0 Glycosyl hydrolase family protein (.1) Potri.005G168500 [exp] 630 / 0 AT1G78060 1069 / 0.0 Glycosyl hydrolase family protein (.1) Potri.002G093900 [exp] 625 / 0 AT1G78060 1069 / 0.0 Glycosyl hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00933 [flax] [poplar] Glyco_hydro_3 Glycosyl hydrolase family 3 N terminal domain CL0058 [flax] [poplar] PF01915 [flax] [poplar] Glyco_hydro_3_C Glycosyl hydrolase family 3 C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10016858 pacid=23179094 polypeptide=Lus10016858 locus=Lus10016858.g ID=Lus10016858.BGIv1.0 annot-version=v1.0 ATGTTGCCGGTTCCCCCCCCCCCCTCCCTCCCGCTCCCCTCTTCCCCCCCCCCCCGCCGCTTCCTTCAACTCCACCCTTTGGGAGCAAATCGGCCGGTGA CGCAGGTGGTGTCGGACGAGGCGAGGGCGATGTACAACGGAGGGGCGGCAGGGCTGACATTTTGGAGCCCGAACGTGAACATATTCAGGGACCCACGGTG GGGGAGAGGCCAAGAGACTCCCGGAGAGGACCCATACCTCGCCGGAAAGTACGCTGCCAGCTACGTCAAAGGACTCCAAAGTGTGTCAGGGAACAGGCTC AAAGTGGCCGCCTGCTGCAAGCACTACACCGCTTACGATCTCGATAACTGGAACGGCGTGGATCGTTACCATTTCAATGCCCAGGTGAGCAAGCAAGATT TGGCGGATACATACGACGTGCCGTTTAAGGCCTGCGTGATGGAAGGCAATGTTGCTAGTGTTATGTGCTCCTACAATCAAGTCAACGGCAAGCCCACTTG CGCTGACCCTGACCTCCTCAAGGGCACCATCCGCGGCCAATGGCACCTTAACGGGTACATCGTCTCGGATTGTGACTCAGTTGGGGTTCTTTACGACAAC CAACATTTCACCAAGACCCCAGAAGAAGCCGCTGCAGCCACCATTAAAGCCGGGTTGGACTTGGATTGTGGCCCGTTCTTGGCAATCCACACGGAGAACG CCGTTAAAGGCGGGCTGTTAACCGAGGAAGACGTTAACCTGGCGTTGGCTAACACGTTAACTGTCCAGATGAGATTGGGTATGTTTGACGGAGAACCGTC GGCCCAGCCTTTTGGGCATTTGGGCCCAACTGACGTCTGCACTCCAGCCCATAACCAGCTGGCCCTCGATGCAGCCCGACAAGGTATCGTCCTTCTTCAG AACCGCGGCAAGGCGTTGCCGCTTTCAACAACCCGCCACCGCACTATCGCCGTCATCGGCCCCAATTCAGACGTCACCGTCACCATGATCGGTAATTACG CCGGAGTTGCTTGCGGCTACACGACTCCCCTGCAAGGAATCGCCAGATATGCAAGGACGTTTCACCAATCGGGATGCTCCGACGTTACCTGCGCCGGAAA CCAACAATTCAGCGCGGCGGAGTTGATTGCACGGCAGGCGGACGCTACTGTTCTGGTAATGGGACTCGACCAATCCATTGAAGCAGAGTTTAGGGATAGG TCGGGTCTCTTGTTGCCAGGTCACCAACAAGAGCTTATCTCCAGAGTGGCCCGAGTTTCCAAAGGCCCAACCATTTTGGTACTTATGAGCGGAAGCCCAA TTGATGTCACATTCGCAAAGAACGATCCACGAATAAGCGCTATTATATGGGCCGGGTATCCGGGTCAGGCCGGCGGTACTGCAATCGCCGATGTATTGTT CGGAACTACCAATCCACATGGGAAGTTGCCGATGACATGGTACCCGCAAAACTACATATCCAAGGTACCAATGACGGACATGGGAATGAGACCCGACCCT AGAAGAGGCTACCCGGGAAGAACCTACCGGTTCTACAAGGGACCCGTGGTTTACCCATTCGGCTACGGACTCACATATGCCAGATTCGGGGTGGCAATAT CCAACGGTCCGAAACAAGTGAATGTGCCACTCTCCACCACAAGTCTCACAACTCTACAACAGGGCAACACTTCTTCACTACCTTCCTCGGCTGCGATCCG AACCATCCACACAGACTGCGAAAGCCACGCGATGTCCCTGGATATCGAAGTGGATGTCAAGAACACCGGAAGCGTGGACGGAATCCACACACTCCTGGTG TTCTCCAGCCCGCCAGAGGGTGATAAGTGGTCGGCTAACAAACAGCTGATCGGGTTCGAGAAGGTGAATTTGGTGGCCGGGTCGAGCAAACTGGTTCGGG TCAATGTCCGGGTGTGTAAGCACCTGAGCGTAGTTGACCAGTACGGGCACCGGAGGATTCCGTTCGGTCAGCATCATCTTCACATCGGTGATCTCAAGCA TTCGGTTTTGATCCAATTGGGTTCCAATGCGATCATCAAGGCATGA
AA sequence Show only first row Show all	>Lus10016858 pacid=23179094 polypeptide=Lus10016858 locus=Lus10016858.g ID=Lus10016858.BGIv1.0 annot-version=v1.0 MLPVPPPPSLPLPSSPPPRRFLQLHPLGANRPVTQVVSDEARAMYNGGAAGLTFWSPNVNIFRDPRWGRGQETPGEDPYLAGKYAASYVKGLQSVSGNRL KVAACCKHYTAYDLDNWNGVDRYHFNAQVSKQDLADTYDVPFKACVMEGNVASVMCSYNQVNGKPTCADPDLLKGTIRGQWHLNGYIVSDCDSVGVLYDN QHFTKTPEEAAAATIKAGLDLDCGPFLAIHTENAVKGGLLTEEDVNLALANTLTVQMRLGMFDGEPSAQPFGHLGPTDVCTPAHNQLALDAARQGIVLLQ NRGKALPLSTTRHRTIAVIGPNSDVTVTMIGNYAGVACGYTTPLQGIARYARTFHQSGCSDVTCAGNQQFSAAELIARQADATVLVMGLDQSIEAEFRDR SGLLLPGHQQELISRVARVSKGPTILVLMSGSPIDVTFAKNDPRISAIIWAGYPGQAGGTAIADVLFGTTNPHGKLPMTWYPQNYISKVPMTDMGMRPDP RRGYPGRTYRFYKGPVVYPFGYGLTYARFGVAISNGPKQVNVPLSTTSLTTLQQGNTSSLPSSAAIRTIHTDCESHAMSLDIEVDVKNTGSVDGIHTLLV FSSPPEGDKWSANKQLIGFEKVNLVAGSSKLVRVNVRVCKHLSVVDQYGHRRIPFGQHHLHIGDLKHSVLIQLGSNAIIKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49360		ATBXL1, BXL1	beta-xylosidase 1 (.1)		Lus10016858 [exp]	0	1
AT1G12780		ATUGE1, UGE1	A. THALIANA UDP-GLC 4-EPIMERAS...		Lus10002246 [exp]	1.4	0.9846
AT5G51970			GroES-like zinc-binding alcoho...		Lus10031659 [exp]	2.0	0.9823
AT4G32480			Protein of unknown function (D...		Lus10011174 [exp]	3.5	0.9813
AT4G33150		LKR/SDH, SDH	lysine-ketoglutarate reductase...		Lus10009808 [exp]	4.7	0.9748
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10028247 [exp]	4.9	0.9813
AT3G48240			Octicosapeptide/Phox/Bem1p fam...		Lus10000441 [exp]	4.9	0.9761
AT1G12780		ATUGE1, UGE1	A. THALIANA UDP-GLC 4-EPIMERAS...		Lus10029572 [exp]	5.0	0.9812
AT5G20250		RS6, DIN10	raffinose synthase 6, DARK IND...		Lus10017516 [exp]	5.5	0.9801
AT1G21000			PLATZ transcription factor fam...		Lus10000952 [exp]	7.3	0.9758
AT1G10600		AMSH2	associated molecule with the S...		Lus10030613 [exp]	7.3	0.9668

Compare expression of checked genes

Lus10016858 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.