Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27290 614 / 0 S-locus lectin protein kinase family protein (.1) AT4G21380 570 / 0 ARK3 receptor kinase 3 (.1) AT4G27300 558 / 0 S-locus lectin protein kinase family protein (.1) AT1G65800 519 / 2e-174 ARK2 receptor kinase 2 (.1) AT1G65790 513 / 5e-172 ARK1 receptor kinase 1 (.1) AT1G11340 514 / 8e-172 S-locus lectin protein kinase family protein (.1) AT1G11330 491 / 8e-164 S-locus lectin protein kinase family protein (.1.2) AT4G21390 487 / 6e-162 B120 S-locus lectin protein kinase family protein (.1) AT1G61480 485 / 1e-161 S-locus lectin protein kinase family protein (.1) AT1G61370 483 / 1e-160 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037732 [exp] 1087 / 0 AT4G21380 768 / 0.0 receptor kinase 3 (.1) Lus10016860 [exp] 1055 / 0 AT4G21380 743 / 0.0 receptor kinase 3 (.1) Lus10037729 [exp] 1044 / 0 AT4G27290 750 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016871 [exp] 1015 / 0 AT4G27290 752 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016862 [exp] 923 / 0 AT4G27290 702 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037731 [exp] 766 / 0 AT4G27290 644 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033365 [exp] 644 / 0 AT4G21380 810 / 0.0 receptor kinase 3 (.1) Lus10038557 [exp] 617 / 0 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037865 [exp] 614 / 0 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G411300 [exp] 808 / 0 AT4G27290 759 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411000 [exp] 803 / 0 AT4G27290 775 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G418100 [exp] 800 / 0 AT4G27290 778 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411400 [exp] 797 / 0 AT4G27290 770 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G410800 [exp] 790 / 0 AT4G27290 758 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411100 [exp] 789 / 0 AT4G27290 746 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G129300 [exp] 748 / 0 AT4G21380 599 / 0.0 receptor kinase 3 (.1) Potri.001G413800 [exp] 687 / 0 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G412400 [exp] 662 / 0 AT4G27290 871 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G412300 [exp] 661 / 0 AT4G27290 886 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10016859 pacid=23179035 polypeptide=Lus10016859 locus=Lus10016859.g ID=Lus10016859.BGIv1.0 annot-version=v1.0 ATGGAGTCGTCGATGTCGCTTCTTCCAGTTTATTTTTTCCTCTTACCATTTTCTTCTTTTGCACTTGAAGCAGTGACTCCAACCCAACCATTGATTGACA GCGATGCACAGACCTTGCAGTCCAGAGATGGAACATTCGAGCTGGGTTTCTTCACTCCTGGAGGCCGAGCAGCTTCCAAGAATCGCTACTTGGGAATTTG GTACAGAAACATAGCTGATAGAAGAGTTGTTTGGGTAGCTAATCGAGAAATTCCAGCCACTGAGAACGGGAGCTCTTTGATCATCGACACTGCCAAGAAC AATAGCCTGGTACTTGTCAGCAGCGACAATAATAATACTGTTTTGTGGTCTAGTTCAGAATACAAAACATCAAACAGTGACGATGCCTTGATGCCCACGA ATCCAGTAGCTGAGCTTCTAGAGACAGGGAATTTGGTACTCAGAGATCAAAAGGATGAAAAAGGTAACTACTTTTGGCAGAGCTTTGATTATCCATGTGA CACGCTGTTACCAGGGATGAAGCTAGGATGGGATTCCAAGACGGGGCTTAACCGTCGACTAACGGCGTGGAAGAGCCCCGAGGATCCATCCGCTGGAGAC TTCACTTGGGGGTACCAACTTCAGGAAAACCCCGAGGTAATTATGTGGAAGGGATCGGATAAAGTGTACAGAGGTGGACCGTGGAATGGCGTAGGGTTTA GTGGTAACCCTGAATTGAGGGACAATCCTCTTTTCTCCTACACATACGTTTGGGACGAAGATGACGTTTACTACACATTTGACCTGAAGAACAAGTCCTT GATCTCCATAGTAGTCGTGAACCAGACCTCGTATAGATGGCACCGCTTGGTTTCGAATGAAGTCTCTCAGAGTTGGGCCATGTATGCTTCAGTGCCGAAG GATCAGTGCGACGGATATGCAATATGTGGTGTGTATGCAAGCTGCGCAGTTTCTGACGCCCCAATTTGTCAGTGCTTGAAAGGGTTCAAGCCTAAGTCAC GTGAGATGTGGGATGTGATGGACTGGTCACATGGTTGCGTGAGGGATAAGCCGTTAGAGTGCTCAGAAGGAAGTACTAGAGATGGGTTTGTCAAGTATAG CGGGCTGAAATTACCCGATGCTACAGATTCATGGGTGAACAAGAGTATGAGTCTGGAGGAATGCAGGGTCAAGTGTTTGATGAATTGTTCATGTATGGCG TATACTAGTACAGATATTCGAGGATCAGGAAGTGGCTGTTCCATTTGGTATGGTGATCTAACCGACATTAAACAGTTTACGGGCACGGGACAAGAGATAT ACATCCGAATGCCAGCTTCCGAGATCGATCAAGAGAGCAAGAATAAGGTGAAACCAAAGGTAGCTTCCATTGTTGGAGCTGTGGTTGGCAGTCTGTTAGG GTTGCTTGCCATTGCCTATTTCATACCTAAGTTGAAATCAAAATTCAGCAAGATGACTGCAAAGCATGGCGGAAATGAAGACATAGAGCTACCATTATTT AAACTAGCTACAATAGTTGATGCCACTGACAACTTTTCAGTCACCAACAAGTTAGGCGAAGGAGGATTTGGTCCTGTATACATGGGTGTTATGGGAGACG GACAAGAAATTGCAGTGAAGAGGCTATCAAGCAGTTCCAGGCAAGGAATAAAGGAGTTCAAGAACGAAGTATTGCTGATATCGAAACTTCAGCATAGGAA TCTTGTCAAGCTTCTAGGGTGCTGCATACAAAGAGACGAGAAGATGCTGGTTTATGAATACATGCCTAACAAAAGCCTCGACTCATTCATTTTTGATGAC AGGAGGAGTAGATTGCTGGATTGGAGGAAGCGTTTCAACATAATTTGTGGGATTGCTAGAGGGCTAATGTATCTTCATCAGGACTCAAGGTTGAGGATCA TACATAGAGATCTGAAAGCAAGTAACGTACTCCTCGATAATGAACTGAACCCAAAAATCTCAGATTTTGGCATGGCTAGAAGTTTTGGCGGAGATAACAC CGAAGGCAATACAAACAGAGTGGTCGGAACATAG
AA sequence Show only first row Show all	>Lus10016859 pacid=23179035 polypeptide=Lus10016859 locus=Lus10016859.g ID=Lus10016859.BGIv1.0 annot-version=v1.0 MESSMSLLPVYFFLLPFSSFALEAVTPTQPLIDSDAQTLQSRDGTFELGFFTPGGRAASKNRYLGIWYRNIADRRVVWVANREIPATENGSSLIIDTAKN NSLVLVSSDNNNTVLWSSSEYKTSNSDDALMPTNPVAELLETGNLVLRDQKDEKGNYFWQSFDYPCDTLLPGMKLGWDSKTGLNRRLTAWKSPEDPSAGD FTWGYQLQENPEVIMWKGSDKVYRGGPWNGVGFSGNPELRDNPLFSYTYVWDEDDVYYTFDLKNKSLISIVVVNQTSYRWHRLVSNEVSQSWAMYASVPK DQCDGYAICGVYASCAVSDAPICQCLKGFKPKSREMWDVMDWSHGCVRDKPLECSEGSTRDGFVKYSGLKLPDATDSWVNKSMSLEECRVKCLMNCSCMA YTSTDIRGSGSGCSIWYGDLTDIKQFTGTGQEIYIRMPASEIDQESKNKVKPKVASIVGAVVGSLLGLLAIAYFIPKLKSKFSKMTAKHGGNEDIELPLF KLATIVDATDNFSVTNKLGEGGFGPVYMGVMGDGQEIAVKRLSSSSRQGIKEFKNEVLLISKLQHRNLVKLLGCCIQRDEKMLVYEYMPNKSLDSFIFDD RRSRLLDWRKRFNIICGIARGLMYLHQDSRLRIIHRDLKASNVLLDNELNPKISDFGMARSFGGDNTEGNTNRVVGT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27290			S-locus lectin protein kinase ...		Lus10016859 [exp]	0	1
AT1G18270			ketose-bisphosphate aldolase c...		Lus10008754 [exp]	5.6	0.9423
AT5G49450	bZIP	ATBZIP1	basic leucine-zipper 1 (.1)		Lus10037750 [exp]	6.3	0.9318
AT5G24890			unknown protein		Lus10009793 [exp]	16.2	0.9247
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Lus10042934 [exp]	18.8	0.9179
AT4G34030		MCCB	3-methylcrotonyl-CoA carboxyla...		Lus10014068 [exp]	22.8	0.9222
AT1G78100		AUF1	auxin up-regulated f-box prote...		Lus10041123 [exp]	25.5	0.8990
AT5G04760	MYB		Duplicated homeodomain-like su...		Lus10041088 [exp]	26.3	0.9102
AT2G18700		ATTPSB, ATTPS11	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10015509 [exp]	30.6	0.9061
AT3G56310			Melibiase family protein (.1.2...		Lus10034218 [exp]	32.4	0.9197
AT5G53110			RING/U-box superfamily protein...		Lus10032382 [exp]	33.6	0.9177

Compare expression of checked genes

Lus10016859 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.