Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21380 720 / 0 ARK3 receptor kinase 3 (.1) AT4G27290 719 / 0 S-locus lectin protein kinase family protein (.1) AT4G27300 684 / 0 S-locus lectin protein kinase family protein (.1) AT1G65800 678 / 0 ARK2 receptor kinase 2 (.1) AT1G65790 671 / 0 ARK1 receptor kinase 1 (.1) AT1G11340 633 / 0 S-locus lectin protein kinase family protein (.1) AT1G11300 603 / 0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT1G11410 603 / 0 S-locus lectin protein kinase family protein (.1) AT1G11330 592 / 0 S-locus lectin protein kinase family protein (.1.2) AT4G21390 588 / 0 B120 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037732 [exp] 1364 / 0 AT4G21380 768 / 0.0 receptor kinase 3 (.1) Lus10016871 [exp] 1328 / 0 AT4G27290 752 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037729 [exp] 1293 / 0 AT4G27290 750 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016862 [exp] 1211 / 0 AT4G27290 702 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016859 [exp] 1061 / 0 AT4G27290 626 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037731 [exp] 1055 / 0 AT4G27290 644 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016876 [exp] 768 / 0 AT4G27300 462 / 5e-156 S-locus lectin protein kinase family protein (.1) Lus10033365 [exp] 765 / 0 AT4G21380 810 / 0.0 receptor kinase 3 (.1) Lus10038553 [exp] 758 / 0 AT4G27290 899 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G411300 [exp] 941 / 0 AT4G27290 759 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G418100 [exp] 938 / 0 AT4G27290 778 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411400 [exp] 936 / 0 AT4G27290 770 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G410800 [exp] 928 / 0 AT4G27290 758 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411000 [exp] 927 / 0 AT4G27290 775 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411100 [exp] 918 / 0 AT4G27290 746 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413800 [exp] 826 / 0 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125050 [exp] 799 / 0 AT4G27290 870 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G414077 [exp] 793 / 0 AT4G27290 855 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G412300 [exp] 791 / 0 AT4G27290 886 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [flax] [poplar] PF11883 [flax] [poplar] DUF3403 Domain of unknown function (DUF3403) CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10016860 pacid=23179051 polypeptide=Lus10016860 locus=Lus10016860.g ID=Lus10016860.BGIv1.0 annot-version=v1.0 ATGGAGGAGTCGTTGATGTTGCTTCTTCTTCCTGTTGTTTATTTTCTCCTCTTCTTACCCTCTTCTTCTTTTGCACTTGAAGCTGTGACTCCAACCCAAC CACTCATTGACAACGATGATGCACAGACCTTGCAGTCGACAGATGGAACATTCGAGCTGGGTTTCTTCACTCCTTCTGGGGCACCTTCCAAGAATCGATA CTTGGGAATTTGGTACAGAAACATAGCCGATACGAAAGTTGTTTGGGTAGCTAATCGTGGCAGTCCAGCCACTGACAGCGGCAGCTCTTTGATCATCGAC ACTGCCAAGAACAACAGCCTGGTACTTGTCAGCAGCAACAATAATAATACTGTTTTATGGTCTAGTACAGAATACGAAATATCAAACAGTGACGATGCCT TGATCCCCACGAATCCAGTTGCCGAACTTCTGGAGACGGGGAATTTGGTACTAAAAGATCAAAACGATGAAATGGGCAATAATTACTTTTGGCAGAGCTT TGACTATCCATGTGACACGCTGTTAGCAGGGATGAAGCTTGGATGGGATTCCAAGACAGGGCTCAACCGTAGAATAATTGCGTGGAAAAGCCCCAAGGAT CCATCCCCTGGAGACTTCATTTGGGGTTACCAAGTTCATGAGGATAACCCTGAGGGATTTTTGTGGAAGGGTTCGGATAAGATGTACAGAGGCGGACCGT GGAATGGCGTAGGGTTTAGTGGTAACCCTGCATTGAAGGAGAATCCTGTTTTCTCATACACTTTCGTTTGGGATGAAGATGATGTTTACTACACATTCGA GCTGGAGAACAAGTCCTTGATCTCGATAGTTGTCATGAACCAGACATCGTATACAAGGCAACGCTTGGCTTGGAATGAAGTCTCTCAGACTTGGGGGACG TATGCAACAGTACCGAGGGATCGATGCGACACCTATGCGATATGTGGCGTGTACGCCACCTGCACGATTTCCGCTTCCCCAATTTGCCAGTGCTTGAAAG GGTTCAAGCCTAAGTCACAGGATATGTGGGATATGTTGGACTGGTCACATGGGTGTGTGCGAAATACGCCATTAGAGTGCTCAGAAGATGGGTTTATCAA GTATAGTGGGTTGAAATTGCCCGATGCTACGAATTCATTTGTGAACAAGAGTATGACTATGGAGGAGTGCAGGGTCAAGTGTTTGATGAATTGTTCTTGT ATGGCGTATACCAGTACCGATATTCGAGGAGCTGGAAGTGGCTGCTCCATTTGGTATGGTGATCTAATCGATATGATACAGTATACAGATGATGGACAAG AGATTTACATTCGAATGCCTGCTTCCGAAATCGAGAACAAGAATAAGGTGAAAACAAGGGTAGGTGCTACTGTTGGAGCTGTGATTGGCATTCTGCTTGG ATTGCCTGCCATTGCCTATTTCATTCGTAAGATGAAGTCAATGTACAGACCAAGAGGCGGCGTCAGGATGAGTAGTGCAACACGGGGCAGAAAAGATGAA GTAGAGCTACCATTGTTTGAACTAGCTACTATAGTTGATGCCACTGACAACTTCTCATTCACCAACAAGTTAGGTGAAGGAGGATTTGGACCTGTCTACA TGGGTGTTATGGCAGATGGGCAAGAAATTGCAGTGAAGAGGCTATCAAGCACTTCAGGGCAAGGAATGATGGAGTTCAAGAATGAAGTAGCACTGATTTC AAAACTTCAGCACAGGAATCTTGTCAAGATTCTAGGGTGTTGCATACAAGGAGACGAGAAGATGCTGGTTTATGAATACTTGCCGAACAAAGGCCTTGAC TCCTTCCTTTTTGATGACAGGAGGAGTGGATTGCTAGACTGGGCTAAGCGTTTCAACATAATCTGTGGAATAGCTAGAGGGTTAATGTATCTTCACCAGG ACTCAAGGTTGAGGATCGTACATAGAGATCTCAAAGCAAGTAACGTGCTCCTCGACAATGAATTGAATCCAAAGATCTCGGATTTTGGTATGGCTAGAAG CTTTAGAGGAGATAACACTGAAGGCAACACAAACAGAGTGGTTGGAACATATGGGTACATGGCACCAGAATATGCCGTTGATGGGTTGTTCTCAGTTAAA TCAGACGTTTTCAGCTTTGGAATTCTTGTACTCGAGATTATAAGTCGAAAAAAAAGTCGAGGTTTCTATCATGTTGACCAGAGCTTGAACCTTATTGGAT ATGCGTGGAAACTATGGAAGGAGAGGAAGGCAATAGAAATAATGGATTCCGCATTAGAAAATGAGCCTGATGAAAATGCGTCACAAGTGATGAGATGTAT TCACATAGGTTTATTATGTGTTCAAAATTGTGTGGAGGATAGACCCACCATGGGAAATGTGGTTGTGATGTTGGGAGGAGGAGAAGAGACAGCTGCGCTA TTGCCTTCACCAAAAGAACCTGGATTCTTCAACATTAAAGATTTTTTTCATGACAGAAAATCATCCTCAAATACCTTTCCGTCATCTTCTACTAACGAAC TGAGTTTCACGATGCTAGAAGCTCGTTGA
AA sequence Show only first row Show all	>Lus10016860 pacid=23179051 polypeptide=Lus10016860 locus=Lus10016860.g ID=Lus10016860.BGIv1.0 annot-version=v1.0 MEESLMLLLLPVVYFLLFLPSSSFALEAVTPTQPLIDNDDAQTLQSTDGTFELGFFTPSGAPSKNRYLGIWYRNIADTKVVWVANRGSPATDSGSSLIID TAKNNSLVLVSSNNNNTVLWSSTEYEISNSDDALIPTNPVAELLETGNLVLKDQNDEMGNNYFWQSFDYPCDTLLAGMKLGWDSKTGLNRRIIAWKSPKD PSPGDFIWGYQVHEDNPEGFLWKGSDKMYRGGPWNGVGFSGNPALKENPVFSYTFVWDEDDVYYTFELENKSLISIVVMNQTSYTRQRLAWNEVSQTWGT YATVPRDRCDTYAICGVYATCTISASPICQCLKGFKPKSQDMWDMLDWSHGCVRNTPLECSEDGFIKYSGLKLPDATNSFVNKSMTMEECRVKCLMNCSC MAYTSTDIRGAGSGCSIWYGDLIDMIQYTDDGQEIYIRMPASEIENKNKVKTRVGATVGAVIGILLGLPAIAYFIRKMKSMYRPRGGVRMSSATRGRKDE VELPLFELATIVDATDNFSFTNKLGEGGFGPVYMGVMADGQEIAVKRLSSTSGQGMMEFKNEVALISKLQHRNLVKILGCCIQGDEKMLVYEYLPNKGLD SFLFDDRRSGLLDWAKRFNIICGIARGLMYLHQDSRLRIVHRDLKASNVLLDNELNPKISDFGMARSFRGDNTEGNTNRVVGTYGYMAPEYAVDGLFSVK SDVFSFGILVLEIISRKKSRGFYHVDQSLNLIGYAWKLWKERKAIEIMDSALENEPDENASQVMRCIHIGLLCVQNCVEDRPTMGNVVVMLGGGEETAAL LPSPKEPGFFNIKDFFHDRKSSSNTFPSSSTNELSFTMLEAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10016860 [exp]	0	1
AT1G11300			protein serine/threonine kinas...		Lus10013245 [exp]	1.4	0.9012
AT1G78610		MSL6	mechanosensitive channel of sm...		Lus10005631 [exp]	4.0	0.8918
AT3G29090		PME31, ATPME31	A. THALIANA PECTIN METHYLESTER...		Lus10014338 [exp]	7.4	0.8417
AT5G25820			Exostosin family protein (.1)		Lus10002799 [exp]	8.7	0.8319
AT5G39020			Malectin/receptor-like protein...		Lus10025545 [exp]	10.2	0.8973
AT5G17680			disease resistance protein (TI...		Lus10029722 [exp]	11.2	0.8020
AT4G15210		BAM5, AT-BETA-A...	REDUCED BETA AMYLASE 1, ARABID...		Lus10039702 [exp]	14.4	0.8972
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10034869 [exp]	14.7	0.8855
AT1G55790			Domain of unknown function (DU...		Lus10039534 [exp]	16.3	0.8808
AT1G31770		ABCG14	ATP-binding cassette G14, ATP-...		Lus10035692 [exp]	16.4	0.7467

Compare expression of checked genes

Lus10016860 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.