Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21380 621 / 0 ARK3 receptor kinase 3 (.1) AT4G27290 616 / 0 S-locus lectin protein kinase family protein (.1) AT1G65790 604 / 0 ARK1 receptor kinase 1 (.1) AT4G27300 595 / 0 S-locus lectin protein kinase family protein (.1) AT1G65800 584 / 0 ARK2 receptor kinase 2 (.1) AT1G11330 546 / 0 S-locus lectin protein kinase family protein (.1.2) AT1G11410 539 / 1e-180 S-locus lectin protein kinase family protein (.1) AT1G61550 534 / 2e-179 S-locus lectin protein kinase family protein (.1) AT1G11340 537 / 4e-179 S-locus lectin protein kinase family protein (.1) AT1G61480 519 / 2e-173 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016871 [exp] 1163 / 0 AT4G27290 752 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037732 [exp] 1125 / 0 AT4G21380 768 / 0.0 receptor kinase 3 (.1) Lus10016860 [exp] 1072 / 0 AT4G21380 743 / 0.0 receptor kinase 3 (.1) Lus10037729 [exp] 1030 / 0 AT4G27290 750 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037731 [exp] 988 / 0 AT4G27290 644 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016859 [exp] 822 / 0 AT4G27290 626 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016876 [exp] 700 / 0 AT4G27300 462 / 5e-156 S-locus lectin protein kinase family protein (.1) Lus10037865 [exp] 661 / 0 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038557 [exp] 654 / 0 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G411000 [exp] 860 / 0 AT4G27290 775 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411100 [exp] 851 / 0 AT4G27290 746 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411300 [exp] 849 / 0 AT4G27290 759 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G418100 [exp] 840 / 0 AT4G27290 778 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G410800 [exp] 826 / 0 AT4G27290 758 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411400 [exp] 806 / 0 AT4G27290 770 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G409300 [exp] 703 / 0 AT4G27290 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125050 [exp] 702 / 0 AT4G27290 870 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125100 [exp] 690 / 0 AT4G27290 856 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G414077 [exp] 686 / 0 AT4G27290 855 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain
Representative CDS sequence Show only first row Show all	>Lus10016862 pacid=23179104 polypeptide=Lus10016862 locus=Lus10016862.g ID=Lus10016862.BGIv1.0 annot-version=v1.0 ATGATTCCAATAAATTCGTTGATGTTGCCTTTTCCTGTTCTTTATTTTCTCCTCTTATCTTCTTCTTCCTTTGCACTTGAAGCTGTCACTCCAACCCAAC CACTGATTGACAATGATGTACAGACCTTACATTCCAAGGATGGAACATTCGAGCTGGGTTTCTTCACTCCTTCCGGGGCACCGTCCAAGAATCGTTACTT GGGAATATGGTACAGAAACATAGCCGTTAGAAAAGTCGTTTGGGTAGCTAACGGAGATAGTCCAGCCACTGACAAAGGCAGCTCTTTGATCATCGACACT TCCAACAACAACAGCCTGGCACTCGTCAGCAGTAGCAACAATAATACTGTTTTATGGGTGAAGCATGGATGGGATTTCAAGACGGGGCTCAACCGACGAC TAACTTCGTGGAAGAGCCCCGAGGATCCATCCCCTGGAGACTTCAGTTGGGGCTTTCAAATTCATCAGGAAAACCCCGAGGCATTTATGTGGAAGGGTTC GGACAAGGTGTACAGGAGTGGACCATGGAATGGCTTGAGGTTTAGTGGTTCACCTGAATTGAGAGAGAATCCTGTTTTTTCCTACACATTTGTCTGGGAT GAAGATGATGCTTACTACACATTCGAGCTGAAGAACAAGTCATTGATCTCAATAGTAGTCATGAACCAGACTTCCTATGCAAGGCAACGCTTGACTTGGA ATGAAGCCACTCAGACTTGGGTGATGTTTACTTCGGTGCCAAGGGATCGATGCGACACCTATGCGATCTGCGGTGTGTACGCGACCTGTGCGATTTTCGA GTCTCCGATTTGCCAGTGCTTGAAAGGGTTCAAGCCTAAGTCGGAGGAGACGTGGGATATGTTGGACTGGTCACAAGGGTGTGTGAGGGATAAACCGTTA CAGTGCTTGGGAGATGGGTTTGTGAAGTATAGTGGCTTGAAATTACCCGATGCTACAAATTCATGGGTGAAGAAGAGTATGAGTCTGGAGGAATGCAGGG TCAAGTGTTTAATGAATTGTTCTTGTATGGCATATACTAGTACCGATATTCGAGGAGCTGGAAGTGGCTGTTCCATTTGGTATGGTGATCTGACCGATGT GACGCAGTTCACAGGTGGGGGACAAGAGCTATACATTCGAATGCCTGCTTCCGAAATTGAGAGCAGCAACAAGGTGAAAACAAGGGTAGGTGCCATTGTT GGAGGTGTGATTGCTACTCTGCTTGGGTTGCTTGCCATTGCCTATTTCATTCGTAAGATGAAACCAAAGTGCAGAAAAAGAGGCGGCATCAAGATGAGTA CTGCAACACTTGGCAGAAAAGATGAAGTAGAGCTACCATTTTTTGAACTAGCTACAATAGTTGATGCCACTGACAACTTCTCATTATCCAACAAGTTAGG CGAAGGAGGATATGGACCTGTCTACGTGGGTGTTATGGCAGATGGACAAGAGATTGCTGTGAAGAGGCTATCAAGCAGTTCAGGACAAGGAATGAAGGAG TTCAAGAACGAAGTATTGCTGATATCAAAACTTCAGCATAGGAATCTTGTCAAGCTTCTAGGGTGTTGCATACAGGGAGATGAGAAGATGTTGGTTTATG AATACATGCCTAACAAAAGCCTCGACTCCTTCCTTTTTGATGACAAGAGGAGTAGATTGCTAGACTGGGCCAGGCGTTTCAATATAATATGTGGAATAGC TAGAGGTCTATTATATCTTCATCAGGACTCAAGATTGAGAATCATACATAGAGATTTAAAAGCAAGTAATGTGCTCCTTGATAATGAACTAAATCCAAAG ATCTCCGATTTTGGCATGACAAAAAGCTTTGGAGGAGATAACACTGAAGGCAACACAAACAGGATGGTCGGAACATATGGATATATGACACCAGAATATG CAGCTGAGGGATCATTCTCAGTCAAATCAGATGTTTTCAGTTTCAGAATTCTTGTGCTAGAGATTATAAGTAGGAAAAAGAGTCGAGGTTTCTATCATAC AAACCAGAACACCAACCTTATTGGATATGCTTGGAAACTGTGGAAGGAAGGGAAGTCATTACAAATAATGGATTCCGTATTAGAAGAAGAGCATTATGAA AATCTATCACAAGTAATAAGATGCATACATATAGGTCTATTATGTGTTCAAAATCGTGCAGAGGACAGACCCACAATGGTAGATGTCGTGGTTATGTTGG GAGGAGGAGAAGAGATTGCTCCACCCAAAAAACCTGAATTCTTCAACTCTAAAGACTCCCTTTATGAAACAGAATCATCCTCAAGTACCTTTCAATTGTC TTCTACTAATGAAATGAGCATCACTGTGCTAGATGCTCGTTGA
AA sequence Show only first row Show all	>Lus10016862 pacid=23179104 polypeptide=Lus10016862 locus=Lus10016862.g ID=Lus10016862.BGIv1.0 annot-version=v1.0 MIPINSLMLPFPVLYFLLLSSSSFALEAVTPTQPLIDNDVQTLHSKDGTFELGFFTPSGAPSKNRYLGIWYRNIAVRKVVWVANGDSPATDKGSSLIIDT SNNNSLALVSSSNNNTVLWVKHGWDFKTGLNRRLTSWKSPEDPSPGDFSWGFQIHQENPEAFMWKGSDKVYRSGPWNGLRFSGSPELRENPVFSYTFVWD EDDAYYTFELKNKSLISIVVMNQTSYARQRLTWNEATQTWVMFTSVPRDRCDTYAICGVYATCAIFESPICQCLKGFKPKSEETWDMLDWSQGCVRDKPL QCLGDGFVKYSGLKLPDATNSWVKKSMSLEECRVKCLMNCSCMAYTSTDIRGAGSGCSIWYGDLTDVTQFTGGGQELYIRMPASEIESSNKVKTRVGAIV GGVIATLLGLLAIAYFIRKMKPKCRKRGGIKMSTATLGRKDEVELPFFELATIVDATDNFSLSNKLGEGGYGPVYVGVMADGQEIAVKRLSSSSGQGMKE FKNEVLLISKLQHRNLVKLLGCCIQGDEKMLVYEYMPNKSLDSFLFDDKRSRLLDWARRFNIICGIARGLLYLHQDSRLRIIHRDLKASNVLLDNELNPK ISDFGMTKSFGGDNTEGNTNRMVGTYGYMTPEYAAEGSFSVKSDVFSFRILVLEIISRKKSRGFYHTNQNTNLIGYAWKLWKEGKSLQIMDSVLEEEHYE NLSQVIRCIHIGLLCVQNRAEDRPTMVDVVVMLGGGEEIAPPKKPEFFNSKDSLYETESSSSTFQLSSTNEMSITVLDAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27290			S-locus lectin protein kinase ...		Lus10016862 [exp]	0	1
AT3G60720		PDLP8	plasmodesmata-located protein ...		Lus10010362 [exp]	1.7	0.9674
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Lus10013384 [exp]	2.6	0.9419
AT1G19715			Mannose-binding lectin superfa...		Lus10024290 [exp]	2.8	0.9603
AT5G27690			Heavy metal transport/detoxifi...		Lus10020906 [exp]	2.8	0.9524
AT1G53540			HSP20-like chaperones superfam...		Lus10017202 [exp]	3.0	0.9577
AT5G23980		FRO2, ATFRO4, F...	ferric reduction oxidase 4 (.1...		Lus10014957 [exp]	3.2	0.9452
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Lus10009582 [exp]	3.3	0.9376
AT3G60720		PDLP8	plasmodesmata-located protein ...		Lus10036497 [exp]	5.5	0.9378
AT1G31335			unknown protein		Lus10040642 [exp]	6.0	0.9430
AT1G76430		PHT1;9	phosphate transporter 1;9 (.1)		Lus10025163 [exp]	7.2	0.9346

Compare expression of checked genes

Lus10016862 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.