Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58200 364 / 2e-126 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G188200 [exp] 447 / 3e-158 AT5G58200 367 / 2e-127 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2) Potri.018G111500 [exp] 67 / 8e-14 AT5G58200 61 / 1e-12 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10016863 pacid=23179086 polypeptide=Lus10016863 locus=Lus10016863.g ID=Lus10016863.BGIv1.0 annot-version=v1.0 ATGAAGGCCACCGCGAGAATCGCCGTCGTCGGAGACATCCATGAAGAATGGAATCAAGACGAAGATACGAAGGCGCTTCAACTGTTACGGCCGGATCTGG TTCTGTTTACTGGTGATTTCGGCAATGAGAATGTTGACCTCGTTCAGAGTATTGCAGATCTTAAATTTCCAAAGGCAGCTATATTAGGAAATCATGATTC CTGGAGTACTCAGAAGTTCTCTTCAAAGACAAAAGATGGTGTGCAACTTCAGCTTGAAAGTCTTGGCGATGAGCATGTTGGATATAGTCGTCTGGACTTT GAAGAACTAAAGATCAGTGTTGTTGGTGGACGTCCGTTTTCTTGTGGCGGTGATCAGCTGTTCAGAAAAAGGCTTCTCTCTAAAAGGTATGGCGTCAAAG ACATGGAAGGAAGTGTTATGAAAATATACAATGCTACTTTGGGGACTCCGGATGACAATTTAGTTATACTTCTTGCACATAATGGTCCAACAGGTCTTGG CTCTAAAATAAACGACATATGCGGGAAAGACTGGTCGGTTGAAGGTGGTGACCATGGTGATCCAGATTTAGCACAAGCCTTGTCCCGCATAAAAGAGTCT AACAAAGTACACATCCCTTTGATTGTGTTCGGCCACATGCATAAAGAGCTGGCAGATGGCAATGGTCTCCGAAAGATGCTTGTAGTTGGTGATGACGGAA CTATTTACCTTAATGGAGCAATTGTGCCGAGAGTGAAGCACATCATCCGTGAACAAAAAGCCGACGATGAAGAAATCGGCAGCTTAAAAAATTTGAATTT GAAGAGTTCTTCTACACAGGATGTTCGAGGAACTGGGCGTGCATTTACATTGATTGAAATTGTGGAGGGGAGAGTGGAGAAGATTGCAGAAACTTGGGTC TCATTATTGAGAGATGATGATGATGAACCTGATGTGGTAGAGGAGCAAGTCTTGTTCGATCGCAGTCCACAAGACAAGGATGAAATGGATAATGCCAAGT TGTGA
AA sequence Show only first row Show all	>Lus10016863 pacid=23179086 polypeptide=Lus10016863 locus=Lus10016863.g ID=Lus10016863.BGIv1.0 annot-version=v1.0 MKATARIAVVGDIHEEWNQDEDTKALQLLRPDLVLFTGDFGNENVDLVQSIADLKFPKAAILGNHDSWSTQKFSSKTKDGVQLQLESLGDEHVGYSRLDF EELKISVVGGRPFSCGGDQLFRKRLLSKRYGVKDMEGSVMKIYNATLGTPDDNLVILLAHNGPTGLGSKINDICGKDWSVEGGDHGDPDLAQALSRIKES NKVHIPLIVFGHMHKELADGNGLRKMLVVGDDGTIYLNGAIVPRVKHIIREQKADDEEIGSLKNLNLKSSSTQDVRGTGRAFTLIEIVEGRVEKIAETWV SLLRDDDDEPDVVEEQVLFDRSPQDKDEMDNAKL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58200			Calcineurin-like metallo-phosp...		Lus10016863 [exp]	0	1
AT3G10540			3-phosphoinositide-dependent p...		Lus10017448 [exp]	2.0	0.7111
AT1G63300			Myosin heavy chain-related pro...		Lus10038860 [exp]	5.8	0.7538
AT4G27080		ATPDI7, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10040029 [exp]	14.7	0.6438
AT1G61100			disease resistance protein (TI...		Lus10018471 [exp]	15.7	0.6791
AT5G66030		ATGRIP, GRIP	Golgi-localized GRIP domain-co...		Lus10010675 [exp]	15.8	0.7043
AT1G62330			O-fucosyltransferase family pr...		Lus10015558 [exp]	16.4	0.6528
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Lus10040349 [exp]	17.9	0.6667
AT1G61100			disease resistance protein (TI...		Lus10011217 [exp]	18.0	0.6775
AT5G24680			Peptidase C78, ubiquitin fold ...		Lus10032907 [exp]	21.6	0.6534
AT1G58520		RXW8	lipases;hydrolases, acting on ...		Lus10010365 [exp]	28.5	0.6276

Compare expression of checked genes

Lus10016863 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.