Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27290 169 / 4e-48 S-locus lectin protein kinase family protein (.1) AT4G27300 169 / 6e-48 S-locus lectin protein kinase family protein (.1) AT4G21380 152 / 5e-42 ARK3 receptor kinase 3 (.1) AT1G11340 151 / 1e-41 S-locus lectin protein kinase family protein (.1) AT1G65800 150 / 3e-41 ARK2 receptor kinase 2 (.1) AT1G11410 150 / 3e-41 S-locus lectin protein kinase family protein (.1) AT1G11300 144 / 3e-39 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT1G11330 137 / 1e-36 S-locus lectin protein kinase family protein (.1.2) AT4G21390 134 / 1e-35 B120 S-locus lectin protein kinase family protein (.1) AT1G61490 132 / 3e-35 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037733 [exp] 299 / 3e-101 AT4G21380 402 / 9e-134 receptor kinase 3 (.1) Lus10037729 [exp] 305 / 2e-98 AT4G27290 750 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016862 [exp] 296 / 2e-95 AT4G27290 702 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016859 [exp] 291 / 2e-94 AT4G27290 626 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016871 [exp] 293 / 7e-94 AT4G27290 752 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016860 [exp] 279 / 1e-88 AT4G21380 743 / 0.0 receptor kinase 3 (.1) Lus10037732 [exp] 278 / 3e-88 AT4G21380 768 / 0.0 receptor kinase 3 (.1) Lus10016876 [exp] 257 / 1e-83 AT4G27300 462 / 5e-156 S-locus lectin protein kinase family protein (.1) Lus10037865 [exp] 201 / 2e-59 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G129350 [exp] 227 / 4e-73 AT4G27290 387 / 2e-128 S-locus lectin protein kinase family protein (.1) Potri.011G129300 [exp] 216 / 5e-66 AT4G21380 599 / 0.0 receptor kinase 3 (.1) Potri.001G411300 [exp] 218 / 1e-65 AT4G27290 759 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G418100 [exp] 218 / 1e-65 AT4G27290 778 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411000 [exp] 217 / 2e-65 AT4G27290 775 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411100 [exp] 216 / 4e-65 AT4G27290 746 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G410800 [exp] 215 / 8e-65 AT4G27290 758 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411400 [exp] 215 / 1e-64 AT4G27290 770 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125000 [exp] 201 / 1e-59 AT4G27290 790 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125100 [exp] 200 / 3e-59 AT4G27290 856 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain
Representative CDS sequence Show only first row Show all	>Lus10016864 pacid=23179120 polypeptide=Lus10016864 locus=Lus10016864.g ID=Lus10016864.BGIv1.0 annot-version=v1.0 ATGAAATTGCCTGATGCTACAAATTCATGGGTGAACAAAAGTATGAGTTTGGAGGAATGCAGAGGCAACTGTTTGATGAATTGTTCTTGTATGGTGTATA CTAGTACCGATATTCGAGGGGCTGGAAGTGGCTGCTCTATTTGGTACGGTGATCTGAACGACATGAAACAGTTTCCAGGCAGGGGACAAGAGATATACAT CCGAATGCCTGCTTCAGAAATAGAGACCAAGAATAAGGTGAGATCAAGGGTAGCTTTCATCGTTGGACCTGTGGTTGGAAGTCTGCTAGGGCTGCTTGCC ATTGCCTATTTCATTCCTAAGATGAAATCAAAGTGCAAAGGTAAAAAAGCTGGGAGACGAAGAGGCAACAGCAAGATGACTGCAAAACTCGGCAGAAATG AAGAAATAGAGCTACCATTATTTGAACTAGCTACAATAGTTGATGCCACTGGCAACTTTGCATTTTCCAACAAGTTAGGGGAAGGAGGATATGGACCTGT CTACGTGGGTGTTATGGGAGATGGGCAAGACATTGCAGTAAAGAGGCTATCAAGCAGTTCAGGGCAAGGAATGAAGGAGTTCAAGAATGAAGTACTACCA ATTTCAAAACTTCAGCACAGGAATATTGTCAAGCTTCTTGGGTGCTGCATGCAGGGAGATGAAAAGATGCTAGTTTATGAATACATGCCTAGCGAACTGA ATCTAAAGATTTCAGATTTTGGCATGACGCTTTGA
AA sequence Show only first row Show all	>Lus10016864 pacid=23179120 polypeptide=Lus10016864 locus=Lus10016864.g ID=Lus10016864.BGIv1.0 annot-version=v1.0 MKLPDATNSWVNKSMSLEECRGNCLMNCSCMVYTSTDIRGAGSGCSIWYGDLNDMKQFPGRGQEIYIRMPASEIETKNKVRSRVAFIVGPVVGSLLGLLA IAYFIPKMKSKCKGKKAGRRRGNSKMTAKLGRNEEIELPLFELATIVDATGNFAFSNKLGEGGYGPVYVGVMGDGQDIAVKRLSSSSGQGMKEFKNEVLP ISKLQHRNIVKLLGCCMQGDEKMLVYEYMPSELNLKISDFGMTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27300			S-locus lectin protein kinase ...		Lus10016864 [exp]	0	1
AT3G18670			Ankyrin repeat family protein ...		Lus10019888 [exp]	1.4	0.8489
					Lus10025850 [exp]	1.7	0.8136
AT1G04260		PRA1.D, MPIP7, ...	PRENYLATED RAB ACCEPTOR 1.D, C...		Lus10042216 [exp]	2.0	0.8335
AT4G11170			Disease resistance protein (TI...		Lus10006732 [exp]	9.2	0.7846
AT5G07610			F-box family protein (.1)		Lus10024021 [exp]	12.7	0.7825
AT5G01750			Protein of unknown function (D...		Lus10009094 [exp]	13.3	0.7719
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10008598 [exp]	13.7	0.7411
AT2G01170		BAT1	bidirectional amino acid trans...		Lus10028561 [exp]	14.9	0.7487
AT1G05577			Domain of unknown function (DU...		Lus10037468 [exp]	23.2	0.6925
AT4G03230			S-locus lectin protein kinase ...		Lus10033742 [exp]	23.5	0.7290

Compare expression of checked genes

Lus10016864 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.