Gene [FLAX] | FIBexDB

Lus10016865 [FLAX]

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Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	TF class	Alias	TAIR10 short description
AT4G21520	94 / 2e-23			Transducin/WD40 repeat-like superfamily protein (.1)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10018434 [exp]	117 / 4e-32	AT4G21520	357 / 2e-121	Transducin/WD40 repeat-like superfamily protein (.1)
Lus10011219 [exp]	40 / 0.0002	AT1G61150	392 / 6e-140	LisH and RanBPM domains containing protein (.1.2.3.4.5.6.7)
Lus10018464 [exp]	40 / 0.0002	AT1G61150	392 / 9e-140	LisH and RanBPM domains containing protein (.1.2.3.4.5.6.7)
Lus10011253 [exp]	0 / 1	AT4G21520	596 / 0.0	Transducin/WD40 repeat-like superfamily protein (.1)

Poplar homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.011G043000 [exp]	103 / 4e-27	AT4G21520	604 / 0.0	Transducin/WD40 repeat-like superfamily protein (.1)
Potri.006G250200 [exp]	38 / 0.001	AT1G52360	466 / 3e-157	Coatomer, beta' subunit (.1.2)

PFAM info

Representative CDS sequence

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>Lus10016865 pacid=23179034 polypeptide=Lus10016865 locus=Lus10016865.g ID=Lus10016865.BGIv1.0 annot-version=v1.0

ATGGATTTTTTAAGTGTCTCCTCCCATGGGCTTGATGGTGCTCCTCCAGCACTGATGTCACTGTTCTGGATTGTTATTCGTCATCTTGCAGAGATCGAGG

CGATGGACGGCTTGGTTCACATCTACGATCTACAAACCGGGCCGTGGATATCGAGCTTTCAGGCTGCTACAGACACAGTCAACGGCTTCGCCTTCCATCC

TTCCTTGCCTATGGCTGTCTCTTCATCCGGCCACCGTAGAATCCAAGTCCCTGATGATGAAGATAACAGCTTCCAACAGACCGGTAACGTCCCACATCCA

ATCATGATGAGAACTGTGTATCTGCTTGGAGCTTCTCGTGCAGAGGATCAGCAATCGAAACAGGGGACAGCGACGAACTCTAGCAGCATGATTCAAATGT

AA sequence

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>Lus10016865 pacid=23179034 polypeptide=Lus10016865 locus=Lus10016865.g ID=Lus10016865.BGIv1.0 annot-version=v1.0

MDFLSVSSHGLDGAPPALMSLFWIVIRHLAEIEAMDGLVHIYDLQTGPWISSFQAATDTVNGFAFHPSLPMAVSSSGHRRIQVPDDEDNSFQQTGNVPHP

IMMRTVYLLGASRAEDQQSKQGTATNSSSMIQM

DESeq2's median of ratios [FLAX]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21520			Transducin/WD40 repeat-like su...		Lus10016865 [exp]	0	1

Lus10016865 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.