Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32420 83 / 3e-17 F-box and associated interaction domains-containing protein (.1) AT5G62660 82 / 2e-16 F-box and associated interaction domains-containing protein (.1) AT1G47790 81 / 3e-16 F-box and associated interaction domains-containing protein (.1) AT4G38870 81 / 7e-16 F-box and associated interaction domains-containing protein (.1) AT4G19940 76 / 3e-14 F-box and associated interaction domains-containing protein (.1) AT4G19930 72 / 5e-13 F-box and associated interaction domains-containing protein (.1) AT1G19160 71 / 9e-13 F-box family protein (.1) AT5G52610 69 / 2e-12 F-box and associated interaction domains-containing protein (.1) AT1G47340 68 / 1e-11 F-box and associated interaction domains-containing protein (.1) AT2G40920 67 / 1e-11 F-box and associated interaction domains-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013934 [exp] 427 / 3e-144 AT1G11270 72 / 7e-14 F-box and associated interaction domains-containing protein (.1.2.3) Lus10011210 [exp] 412 / 3e-138 AT1G32420 87 / 7e-19 F-box and associated interaction domains-containing protein (.1) Lus10007285 [exp] 380 / 5e-126 AT3G04660 82 / 7e-17 F-box and associated interaction domains-containing protein (.1) Lus10007277 [exp] 380 / 5e-126 AT3G04660 82 / 6e-17 F-box and associated interaction domains-containing protein (.1) Lus10011197 [exp] 381 / 4e-125 AT1G47790 86 / 6e-18 F-box and associated interaction domains-containing protein (.1) Lus10011190 [exp] 358 / 4e-116 AT1G32420 78 / 1e-15 F-box and associated interaction domains-containing protein (.1) Lus10018460 [exp] 332 / 3e-108 AT1G32420 66 / 9e-12 F-box and associated interaction domains-containing protein (.1) Lus10011200 [exp] 286 / 9e-92 AT1G47790 84 / 2e-18 F-box and associated interaction domains-containing protein (.1) Lus10022939 [exp] 283 / 4e-90 AT1G52490 56 / 2e-08 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G458400 [exp] 97 / 2e-21 AT2G31470 113 / 8e-28 DROUGHT TOLERANCE REPRESSOR, F-box and associated interaction domains-containing protein (.1) Potri.007G074084 [exp] 82 / 1e-16 AT1G11270 83 / 1e-17 F-box and associated interaction domains-containing protein (.1.2.3) Potri.014G162600 [exp] 79 / 2e-15 AT3G07870 467 / 9e-164 F-box and associated interaction domains-containing protein (.1) Potri.002G223000 [exp] 79 / 3e-15 AT3G07870 467 / 5e-164 F-box and associated interaction domains-containing protein (.1) Potri.001G035500 [exp] 77 / 1e-14 AT4G12560 271 / 3e-87 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.008G144000 [exp] 77 / 1e-14 AT4G38870 97 / 6e-22 F-box and associated interaction domains-containing protein (.1) Potri.011G037200 [exp] 74 / 1e-13 AT3G07870 134 / 6e-35 F-box and associated interaction domains-containing protein (.1) Potri.017G058900 [exp] 73 / 1e-13 AT3G06240 132 / 2e-34 F-box family protein (.1) Potri.011G037312 [exp] 73 / 2e-13 AT3G07870 134 / 3e-35 F-box and associated interaction domains-containing protein (.1) Potri.001G318400 [exp] 70 / 1e-12 AT3G06240 142 / 3e-38 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0162 [flax] [poplar] FBA PF08268 [flax] [poplar] FBA_3 F-box associated domain CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10016866 pacid=23179107 polypeptide=Lus10016866 locus=Lus10016866.g ID=Lus10016866.BGIv1.0 annot-version=v1.0 ATGATGTTAGTTCATCCAAACCATCCTTATGCATTCAATTTCTCTGGCTGGTTGTCTCAAAAGAAAAAGAATGATCTTGATGACGTTTGGACAAATAAGA AGAGGAAGAAGAGGAACGAGCAGAATAATAAGAAGAGTAAGAAGAGAAGGATGCCAAAAAAGAAAGATCTTGATGATGATCTTTGGGCTAAGCAGATGCT CAGAAGACCCCTAGGCACGTCAAATCTGAATGATGAGCTTCTCATTACTCAGATGCTGACAAGATTCGTAGATTGGTCAAATCGTATTCAGACAAATAAG AAGAGGAAGAAGAGGAACGAGCAGAAGAAGAATAAGAAGGGGAACGAGCAGGAGAAGAATAAGAAGAGAAGGATAACAAAAAAGAACTATGTTGATGATG AGCTTTTCATTACTCAGATGCTGAGAAGATTTGTAGCCTGGTCAAATCGTATTACGACAAATAAGAAGAGGAAGAAGAGGAACGAGCAGAAGAAGAATAA GAAGGGGAACGAGCAGGAGAAGAATAAGAAGAGAAGGATAACAAAAAAGAACTATGTTGATGATGATGAGTTTTTCATTACTCAGATGCTGATAAGATTT GTAGCCTGGTTAAATCGTATTCTGACAAATAAGAAGAGGAAGAAGAGGAACGAGCAGAAGAAGAATAAGAAGGGGAATGAGCAGGAGAAGAATAAGAAGA GAAGGATAACAAAAAAGAACTATGTTGATGATGATGATCTGGTGATTACTCAGATACTCAGCAAACTCCCAGTCAAGTCACTTGTGCGGTTTAAGTCCGT CTCTAAATCCTGGCAATCGGTTATCGAAAGAGATTCACACTTTATCAATTTACACCGCGTCCATTCACAATCACGCCCCCCGCAATTGTTGATTATCGTC CTCAATAAGCTAGACTGCTTGAGAAGAAGGGGTTGTTTTGATTTTTTGCCAGCCGATCTGGACTTTGACGGTGGTGGGGATGTCCAAGGAGCCACTATTA ATAACCAAATGAAAGTGAGAGCGACAAGTCCAAATGTCGATGTTTTGGGACCCGTTAGGGGATTGCTTTGTTTCGTTGACTATGACAACTTTAAAGTACT GATTTACAATGTCACCACTCGAGAAGCTGTTACACCATGGATCAGATCGAGCATGAGTTTGAAGAAGCTTCCCTTGGACAAGCTGGTATGTCAATTTGGA TTCGATCCCGATACTGGAGAATATAAAGTTATTTTCATCTGGCATGATTCATCTATACCGGCTTGGATTCGTTTTGTACCGGCTTGTTGTGAGGTGTTGA CTGTAGGGGTTGACTATAGTTGGAGAATAATTGACATTGTACCTGGACTTGAAGTCAAGTCAAGCAATACTACTTATGTCAATGGTTCCATCTATTGGAT GTGTGACTCTAAAGATTCCTTAGTGGCATTTGACATTGGATCTGAGAAGTTTAGGATGATTAGAATCCCCAAATTCGTACATTTCAGGTCCGTTAACGTC AGCAATATAATGGAATTGGATGGGTGCCTAACCATCATGTCTCTCCCCGGCCTAGATGCGCGAAAATTGAAGCTGTGGAAATTTCATGATCGTAATAAGA ATGGAACATCTAATACTACTGTTGGCAGAAGTGAAAGAGAAGATTGGTGTGCAGTTAGTATTAAACTGCCTCGGTATATATTTCCCATGGGCATTGTACT TCATCAGATACCTGGGAAAGACCAGATTATCCTGGAATCCTTTTATGGGTACGTGAAGCCGAACGTAAAGCGTACCCGGTTTGACTGTTACAACAGGATA AACAAGAGTTTCAGCGAGTTTAAAATCCAAGGAATTCCCTCCCTTCCAGACGGTTTCACAAGCCGTTGTAAACTTTTGGTAGAATGTTTGTCTCCTGTTG CTACGAAAAAACCAGTGAAGAAGCTGCCGAGTAAAATGGTTTGTTGA
AA sequence Show only first row Show all	>Lus10016866 pacid=23179107 polypeptide=Lus10016866 locus=Lus10016866.g ID=Lus10016866.BGIv1.0 annot-version=v1.0 MMLVHPNHPYAFNFSGWLSQKKKNDLDDVWTNKKRKKRNEQNNKKSKKRRMPKKKDLDDDLWAKQMLRRPLGTSNLNDELLITQMLTRFVDWSNRIQTNK KRKKRNEQKKNKKGNEQEKNKKRRITKKNYVDDELFITQMLRRFVAWSNRITTNKKRKKRNEQKKNKKGNEQEKNKKRRITKKNYVDDDEFFITQMLIRF VAWLNRILTNKKRKKRNEQKKNKKGNEQEKNKKRRITKKNYVDDDDLVITQILSKLPVKSLVRFKSVSKSWQSVIERDSHFINLHRVHSQSRPPQLLIIV LNKLDCLRRRGCFDFLPADLDFDGGGDVQGATINNQMKVRATSPNVDVLGPVRGLLCFVDYDNFKVLIYNVTTREAVTPWIRSSMSLKKLPLDKLVCQFG FDPDTGEYKVIFIWHDSSIPAWIRFVPACCEVLTVGVDYSWRIIDIVPGLEVKSSNTTYVNGSIYWMCDSKDSLVAFDIGSEKFRMIRIPKFVHFRSVNV SNIMELDGCLTIMSLPGLDARKLKLWKFHDRNKNGTSNTTVGRSEREDWCAVSIKLPRYIFPMGIVLHQIPGKDQIILESFYGYVKPNVKRTRFDCYNRI NKSFSEFKIQGIPSLPDGFTSRCKLLVECLSPVATKKPVKKLPSKMVC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32420			F-box and associated interacti...		Lus10016866 [exp]	0	1
AT1G20920			P-loop containing nucleoside t...		Lus10035327 [exp]	2.0	0.9033
					Lus10003603 [exp]	2.6	0.9187
AT1G31870			unknown protein		Lus10033140 [exp]	6.2	0.8878
AT1G20920			P-loop containing nucleoside t...		Lus10035328 [exp]	10.5	0.8703
AT5G42000			ORMDL family protein (.1.2)		Lus10033219 [exp]	11.8	0.8728
AT2G06210		VIP6, ELF8	VERNALIZATION INDEPENDENCE 6, ...		Lus10000472 [exp]	12.8	0.8651
AT1G20920			P-loop containing nucleoside t...		Lus10029986 [exp]	18.5	0.8472
AT5G43490			unknown protein		Lus10002352 [exp]	20.5	0.8476
AT2G45590			Protein kinase superfamily pro...		Lus10031678 [exp]	29.1	0.8383
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Lus10040030 [exp]	35.7	0.8162

Compare expression of checked genes

Lus10016866 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.