Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16910 898 / 0 AAE7, ACN1 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) AT1G20560 596 / 0 AAE1 acyl activating enzyme 1 (.1.2) AT2G17650 572 / 0 AMP-dependent synthetase and ligase family protein (.1) AT5G16370 535 / 0 AAE5 acyl activating enzyme 5 (.1) AT5G16340 525 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G65880 523 / 0 BZO1 benzoyloxyglucosinolate 1 (.1) AT1G65890 517 / 1e-178 AAE12 acyl activating enzyme 12 (.1) AT1G21530 515 / 2e-178 AMP-dependent synthetase and ligase family protein (.1.2) AT1G21540 509 / 4e-176 AMP-dependent synthetase and ligase family protein (.1) AT1G75960 504 / 2e-174 AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037734 [exp] 1142 / 0 AT3G16910 897 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10037735 [exp] 931 / 0 AT3G16910 909 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10016870 [exp] 929 / 0 AT3G16910 918 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10016011 [exp] 591 / 0 AT1G20560 846 / 0.0 acyl activating enzyme 1 (.1.2) Lus10028375 [exp] 571 / 0 AT2G17650 793 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10007369 [exp] 559 / 0 AT1G65890 724 / 0.0 acyl activating enzyme 12 (.1) Lus10020787 [exp] 553 / 0 AT1G65890 727 / 0.0 acyl activating enzyme 12 (.1) Lus10010956 [exp] 538 / 0 AT1G65890 696 / 0.0 acyl activating enzyme 12 (.1) Lus10039161 [exp] 537 / 0 AT5G16370 781 / 0.0 acyl activating enzyme 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G108000 [exp] 917 / 0 AT3G16910 904 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Potri.002G010600 [exp] 618 / 0 AT1G20560 823 / 0.0 acyl activating enzyme 1 (.1.2) Potri.005G250700 [exp] 610 / 0 AT1G20560 790 / 0.0 acyl activating enzyme 1 (.1.2) Potri.005G099500 [exp] 588 / 0 AT2G17650 800 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.015G148500 [exp] 559 / 0 AT5G16370 760 / 0.0 acyl activating enzyme 5 (.1) Potri.019G067800 [exp] 551 / 0 AT5G16370 799 / 0.0 acyl activating enzyme 5 (.1) Potri.017G138350 [exp] 548 / 0 AT1G65880 724 / 0.0 benzoyloxyglucosinolate 1 (.1) Potri.004G082000 [exp] 547 / 0 AT1G65880 724 / 0.0 benzoyloxyglucosinolate 1 (.1) Potri.004G000300 [exp] 545 / 0 AT5G16340 756 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.016G034800 [exp] 543 / 0 AT1G66120 692 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10016869 pacid=23179032 polypeptide=Lus10016869 locus=Lus10016869.g ID=Lus10016869.BGIv1.0 annot-version=v1.0 ATGGCGATGACGCCGATGAGAGACATAGACGAGCTTCCAAAACACGAAGCAAACTACACAGCCTTGACTCCCCTCTGGTTTCTCGAAAGAGCTGCCTTCA TCCATCCCACTAGGCTCTCCCTCGTTCATGGGTCCCTCACCTACACCTGGCATGACACCTACCGCCGCTGCCGGAAGCTGGCTTCCGCTCTCTCCGCCCA CTCCATCGGCCCTGGCTCTACGGTGGCAGTGATAGCACCAAACATCCCAGCAATGTACGAAGCCCATTTCGCAGTTCCAATGACAGGAGCAGTGGTCAAC TGCGTCAACATTCGTCTCAATGCATCAACAATTGCTTTCCTACTAGGCCATTCCAGGTCTGCTGTTGTCATGGTGGACCAAGAGTTCTTCACCTTGGCTG AGGAGTCCTTGCACATCTTGTCCCGGACCAATCCGGACTTCAAGTCTCCTCTGGTGATTGTAATAGCCGATGAGAGCTGTGAACCAAGCTCGCTAAAGCA TGCTCTGGCACGAGGAGGAGTCATCGAATACGAGACTTTCTTGGGGAATGGTGATGCCGAGTATTCTTGGAAGCCACCAGCTGATGAGTGGCAGAGTATT GCTTTGGGTTATACCTCTGGCACGACTGCGAATCCTAAGGGAGTTGTGTTGAGCCATAGAGGAGCTTATCTCATGTCATTGAGTGGTGCTATGAATTGGG GTATGAATGAAGGAGCTGTCTACCTTTGGACTTTGCCTATGTTCCATTGCAATGGCTGGTGTTTCACTTGGGGACTTGCTGCTCTTTTTGGCACTAACAT TTGCCTTAGACAGGTAACGGCCAAGGCAGTGTATTCAGCAATAGAAAACAAACGTGTCACACATTTTTGTGCAGCCCCAGTGGTTCTAAACACCATAGTG AATTCGCCAAAGGAGGACGTAATCCTTCCTTTACCTCGAACTGTACACGTAATGACTGCCGGAGCTGCACCACCACCATCTATACTCTTTGCCATGACTG AGAAGGGATTTAGAGTCACACACACTTATGGTCTCTCAGAGACCTATGGTCCATCAACTGTATGCGCTTGGAAGCCCGAATGGGACTCGCTACCGCCCAT CACCCAAGCTCGCCTCAACGCTCGCCAAGGGGTTCGTTACATTGGCCTAGAAGGGCTAGACATCGTTGACCCGAAAACCATGAACCCTGTCCCAGCAGAT GGGGCGACATTGGGAGAGATAGTGATGAGAGGGAATGGAGTGATGAAAGGTTACTTGAAGAACCCTAAAGCGAACGAGGAGGCATTTGCGGGAGGATGGT TTCATTCGGGTGACTTGGGCGTGAAGCATCCAGATGGGTATATTGAGATCAAGGACAGAGCTAAGGACATCATCATATCTGGTGGGGAGAACATTAGCAG CTTGGAAGTAGAGAACATAATGTATACTCACCCTAAGGTTTATGAGGTCTCAGTGGTGGCTAGGCCTGACGAACGTTGGGGGGAATCGCCTTGTGCGTTC GTGACATTGAAGCCTGGCGTAGAAGGTGGTGATGGTGTATCTGATGATGGAATTAGGAAGAAGTTGGAGGAAGATATAGTGAAGTTTTGTAGGGCTAATA TGCCTGCTTATTGGGTTCCAAAGTCTGTGGTGTTTGGTCCATTGCCCAAGACTGCTACTGGGAAGATTCAGAAGCATGTTTTAAGGGGTAAAGCTAAAGA AATGGGACCAGTTAGGAAGAGCAAGATGTAA
AA sequence Show only first row Show all	>Lus10016869 pacid=23179032 polypeptide=Lus10016869 locus=Lus10016869.g ID=Lus10016869.BGIv1.0 annot-version=v1.0 MAMTPMRDIDELPKHEANYTALTPLWFLERAAFIHPTRLSLVHGSLTYTWHDTYRRCRKLASALSAHSIGPGSTVAVIAPNIPAMYEAHFAVPMTGAVVN CVNIRLNASTIAFLLGHSRSAVVMVDQEFFTLAEESLHILSRTNPDFKSPLVIVIADESCEPSSLKHALARGGVIEYETFLGNGDAEYSWKPPADEWQSI ALGYTSGTTANPKGVVLSHRGAYLMSLSGAMNWGMNEGAVYLWTLPMFHCNGWCFTWGLAALFGTNICLRQVTAKAVYSAIENKRVTHFCAAPVVLNTIV NSPKEDVILPLPRTVHVMTAGAAPPPSILFAMTEKGFRVTHTYGLSETYGPSTVCAWKPEWDSLPPITQARLNARQGVRYIGLEGLDIVDPKTMNPVPAD GATLGEIVMRGNGVMKGYLKNPKANEEAFAGGWFHSGDLGVKHPDGYIEIKDRAKDIIISGGENISSLEVENIMYTHPKVYEVSVVARPDERWGESPCAF VTLKPGVEGGDGVSDDGIRKKLEEDIVKFCRANMPAYWVPKSVVFGPLPKTATGKIQKHVLRGKAKEMGPVRKSKM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16910		AAE7, ACN1	ACETATE NON-UTILIZING 1, acyl-...		Lus10016869 [exp]	0	1
AT3G16910		AAE7, ACN1	ACETATE NON-UTILIZING 1, acyl-...		Lus10037734 [exp]	1.0	0.9106
AT3G22840		ELIP1	EARLY LIGHT-INDUCABLE PROTEIN,...		Lus10039378 [exp]	3.2	0.8862
AT4G27030		FADA, FAD4	FATTY ACID DESATURASE 4, fatty...		Lus10017089 [exp]	8.0	0.8620
AT5G13630		ABAR, CHLH, CCH...	ABA-BINDING PROTEIN, magnesium...		Lus10018069 [exp]	8.3	0.8626
AT1G16720		HCF173	high chlorophyll fluorescence ...		Lus10033322 [exp]	13.0	0.8493
AT2G45560		CYP76C1	"cytochrome P450, family 76, s...		Lus10027431 [exp]	15.0	0.7841
					Lus10029619 [exp]	15.3	0.7758
AT3G22840		ELIP1	EARLY LIGHT-INDUCABLE PROTEIN,...		Lus10006620 [exp]	17.5	0.8280
AT1G32900		GBSS1	granule bound starch synthase ...		Lus10033245 [exp]	18.8	0.8391
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10005765 [exp]	19.8	0.8199

Compare expression of checked genes

Lus10016869 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.